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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00282
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00282
Identity
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-75
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.77 | 55.0 | 3.80e-01 | 75.3% | 25.9% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.76 | 55.0 | 5.64e-01 | 75.3% | 81.7% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.74 | 50.0 | 4.09e-01 | 74.0% | 38.3% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.73 | 58.0 | 5.25e-01 | 84.9% | 89.7% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.71 | 52.0 | 5.15e-01 | 79.5% | 75.6% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.68 | 48.0 | 4.53e-01 | 72.6% | 91.8% |
| 3m7gA02 | 1.10.8.1010 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 47.0 | 4.35e-01 | 74.0% | 78.9% |
| 3b8cA01 | 1.20.1110.10 | Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain | 0.65 | 47.0 | 2.98e-01 | 76.7% | 15.8% |
| 4gr6B00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.64 | 45.0 | 3.99e-01 | 74.0% | 51.4% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.64 | 52.0 | 4.41e-01 | 93.2% | 54.2% |
| 1sxjC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.62 | 47.0 | 4.32e-01 | 80.8% | 64.2% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.59 | 44.0 | 4.03e-01 | 84.9% | 71.7% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.58 | 47.0 | 3.41e-01 | 91.8% | 41.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3745112 | 3755.3.1.298 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING | 0.77 | 55.0 | 4.61e-01 | 75.3% | 50.0% |
| 3619802 | 601.1.1.110 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Transmemb_17 | 0.74 | 61.0 | 5.55e-01 | 91.8% | 100.0% |
| 3628140 | 3826.1.1.43 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Med14 | 0.73 | 52.0 | 4.47e-01 | 76.7% | 49.1% |
| 3506234 | 5043.1.1.15 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Med14 | 0.72 | 51.0 | 4.52e-01 | 76.7% | 51.4% |
| 3781836 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.72 | 51.0 | 3.06e-01 | 75.3% | 10.3% |
| 3915818 | 4207.1.1.35 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med14 | 0.71 | 50.0 | 4.48e-01 | 75.3% | 53.0% |
| 3474600 | 4207.1.2.48 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med14 | 0.70 | 50.0 | 4.50e-01 | 76.7% | 54.0% |
| 5064072 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.70 | 52.0 | 4.81e-01 | 78.1% | 90.0% |
| 2885637 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 60.0 | 4.05e-01 | 95.9% | 54.9% |
| 4016144 | 5086.1.1.64 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Sin3_corepress | 0.64 | 56.0 | 4.79e-01 | 98.6% | 60.0% |
| 3344691 | 109.46.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH_Armc9 | 0.55 | 45.0 | 3.77e-01 | 97.3% | 49.0% |