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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00350

Bact-Vir

P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00350

Identity

Kingdom:
phage

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-72
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.06e-01 93.3% 92.2%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 61.0 4.44e-01 96.7% 93.2%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 54.0 4.10e-01 86.7% 70.9%
1iq0A02 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.65 39.0 3.27e-01 86.7% 35.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.65 50.0 3.86e-01 85.0% 37.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 52.0 4.29e-01 88.3% 56.6%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 43.0 3.68e-01 90.0% 45.1%
3o8oA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 44.0 3.06e-01 96.7% 23.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.48e-01 81.7% 83.1%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.57 49.0 4.12e-01 93.3% 78.4%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.56 52.0 4.69e-01 100.0% 85.9%
3ibvB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 45.0 2.47e-01 86.7% 6.0%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 43.0 2.97e-01 85.0% 100.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 47.0 3.72e-01 95.0% 80.5%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.55 40.0 3.49e-01 96.7% 49.5%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.55 36.0 3.17e-01 75.0% 46.6%
1wxnA00 2.20.20.10 Mainly Beta › Single Sheet › Anthopleurin-A › Anthopleurin-A 0.54 26.0 3.03e-01 73.3% 59.5%
6h05A00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 43.0 2.96e-01 91.7% 43.6%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 2.96e-01 83.3% 32.9%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 37.0 2.83e-01 78.3% 48.4%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 39.0 3.12e-01 85.0% 60.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
140040 4216.1.1.3 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.65 50.0 3.86e-01 85.0% 37.7%
3230226 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.61 49.0 3.40e-01 86.7% 26.7%
5014663 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.60 48.0 3.03e-01 90.0% 17.9%
3560047 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.60 51.0 5.01e-01 91.7% 90.8%
3700533 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 3.26e-01 100.0% 25.9%
3263650 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 2.82e-01 100.0% 20.3%
4927082 5056.1.1.1 ↗ extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › MscL 0.56 47.0 4.03e-01 93.3% 74.7%
3526060 1075.1.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.56 48.0 3.10e-01 100.0% 77.0%
3497680 5054.1.1.63 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.55 47.0 2.89e-01 93.3% 18.1%
4260133 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 43.0 2.72e-01 88.3% 65.7%
3590646 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.54 42.0 3.33e-01 86.7% 44.8%
3666484 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.54 39.0 3.13e-01 80.0% 53.1%
3645888 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.53 43.0 3.18e-01 96.7% 43.2%
None — 0.53 40.0 2.43e-01 86.7% 16.4%
3499106 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.52 43.0 2.61e-01 91.7% 25.5%