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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00356
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00356
Identity
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-72
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 43.0 | 4.57e-01 | 96.9% | 71.4% |
| 4l8jA01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.66 | 39.0 | 3.38e-01 | 92.3% | 37.8% |
| 1z8gA01 | 3.10.250.10 | Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain | 0.61 | 44.0 | 3.76e-01 | 76.9% | 94.2% |
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 4.09e-01 | 86.2% | 75.8% |
| 4uhvA04 | 2.40.50.230 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain | 0.52 | 36.0 | 3.15e-01 | 95.4% | 45.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073026 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 39.0 | 4.37e-01 | 93.8% | 80.0% |
| 3695678 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.64 | 39.0 | 2.36e-01 | 76.9% | 9.1% |
| 4026200 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.61 | 42.0 | 4.15e-01 | 86.2% | 67.1% |
| 3657923 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.60 | 39.0 | 3.48e-01 | 84.6% | 45.3% |
| 3684509 | 2006.1.1.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP | 0.60 | 46.0 | 3.30e-01 | 84.6% | 56.2% |
| 4029445 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.60 | 39.0 | 4.16e-01 | 84.6% | 80.0% |
| 3651436 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 45.0 | 3.20e-01 | 84.6% | 54.3% |
| None | — | 0.56 | 35.0 | 2.30e-01 | 89.2% | 14.5% | |
| 3290096 | 244.2.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 | 0.55 | 39.0 | 3.77e-01 | 75.4% | 88.0% |
| 3833400 | 376.1.1.63 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 | 0.55 | 39.0 | 3.15e-01 | 75.4% | 44.0% |
| 5041463 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.88e-01 | 100.0% | 29.1% |
| 3813642 | 1.1.1.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C | 0.54 | 44.0 | 2.99e-01 | 90.8% | 84.2% |
| 4004117 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.54 | 44.0 | 3.46e-01 | 93.8% | 85.3% |
| 3448800 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.53 | 43.0 | 3.63e-01 | 89.2% | 90.9% |
| 3792226 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 41.0 | 4.29e-01 | 86.2% | 93.3% |
| 3472228 | 376.1.3.30 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF | 0.52 | 37.0 | 3.52e-01 | 76.9% | 93.8% |
| 3981484 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.52 | 38.0 | 3.37e-01 | 80.0% | 89.0% |
| 3478406 | 3246.1.1.2 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM17_MPD | 0.52 | 40.0 | 4.00e-01 | 86.2% | 92.6% |
| 5028546 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 31.0 | 3.03e-01 | 83.1% | 52.9% |
| 3500573 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.51 | 41.0 | 2.69e-01 | 92.3% | 96.4% |
| 3166430 | 9.11.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › Nm-ACP | 0.51 | 35.0 | 3.01e-01 | 100.0% | 43.5% |