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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00028
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00028
Identity
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-122
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.65 | 34.0 | 3.55e-01 | 82.8% | 53.9% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 35.0 | 3.66e-01 | 79.8% | 57.8% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 39.0 | 4.63e-01 | 92.9% | 96.8% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 38.0 | 4.42e-01 | 96.0% | 93.8% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.58 | 34.0 | 4.21e-01 | 90.9% | 98.3% |
| 4jhmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 33.0 | 3.15e-01 | 75.8% | 46.2% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 34.0 | 3.80e-01 | 87.9% | 80.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.51 | 30.0 | 2.68e-01 | 75.8% | 39.2% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.91e-01 | 79.8% | 100.0% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 45.0 | 3.82e-01 | 99.0% | 72.7% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 28.0 | 3.33e-01 | 85.9% | 91.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4221575 | 4099.1.1.52 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FTA2 | 0.69 | 32.0 | 3.21e-01 | 88.9% | 41.9% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.65 | 35.0 | 3.92e-01 | 79.8% | 68.0% |
| 4452393 | 304.112.1.10 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N | 0.64 | 38.0 | 3.73e-01 | 81.8% | 55.2% |
| 3928388 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.63 | 38.0 | 2.93e-01 | 82.8% | 27.9% |
| 3497398 | 395.1.1.0 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related | 0.61 | 31.0 | 3.91e-01 | 72.7% | 90.0% |
| 3818341 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.56 | 32.0 | 3.57e-01 | 82.8% | 70.5% |
| 2780879 | 1172.1.1.1 ↗ | beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 | 0.51 | 27.0 | 2.67e-01 | 72.7% | 44.1% |
| 3669780 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.51 | 39.0 | 2.61e-01 | 83.8% | 34.4% |
| 3445177 | 9.1.1.10 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE | 0.50 | 45.0 | 3.67e-01 | 100.0% | 73.7% |