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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00029

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00029

Identity

Kingdom:
phage

Quality

94.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-110
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 43.0 3.47e-01 100.0% 34.7%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 51.0 4.85e-01 83.8% 93.8%
6z0fA02 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.62 43.0 3.54e-01 70.7% 55.4%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.62 49.0 3.91e-01 83.8% 91.7%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.61 48.0 3.85e-01 84.8% 98.0%
2rgnB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.61 49.0 3.91e-01 86.9% 89.2%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.61 49.0 3.82e-01 87.9% 87.3%
3w1oA00 3.40.1760.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › 0.59 50.0 4.75e-01 89.9% 93.9%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.59 43.0 4.62e-01 93.9% 86.4%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 54.0 5.06e-01 100.0% 86.7%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.58 46.0 3.75e-01 86.9% 90.9%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 51.0 3.84e-01 94.9% 77.5%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.57 46.0 3.11e-01 89.9% 80.7%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.56 43.0 4.59e-01 92.9% 94.1%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.56 47.0 4.00e-01 91.9% 96.9%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 49.0 4.30e-01 99.0% 72.8%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 48.0 4.66e-01 98.0% 87.2%
2r0yA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 49.0 4.35e-01 100.0% 87.6%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 45.0 4.09e-01 88.9% 70.1%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 44.0 3.32e-01 91.9% 34.1%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 48.0 4.50e-01 100.0% 95.1%
4py6C00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 48.0 4.47e-01 100.0% 85.8%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 47.0 4.41e-01 96.0% 86.8%
6kmjA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 46.0 4.48e-01 94.9% 91.1%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 45.0 4.49e-01 93.9% 91.1%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 4.11e-01 97.0% 94.2%
5cy5B00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.53 41.0 3.62e-01 82.8% 85.2%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 45.0 4.34e-01 99.0% 83.8%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 45.0 4.31e-01 94.9% 82.6%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 47.0 4.00e-01 94.9% 62.5%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 45.0 4.53e-01 93.9% 91.2%
4gxwB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 46.0 3.13e-01 98.0% 51.4%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 3.90e-01 94.9% 97.3%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 47.0 4.49e-01 99.0% 86.0%
2yw5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 46.0 4.15e-01 100.0% 72.5%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.52 44.0 4.21e-01 98.0% 79.5%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 43.0 4.28e-01 92.9% 91.3%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 46.0 4.38e-01 100.0% 85.3%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 42.0 4.12e-01 90.9% 88.9%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.51 35.0 3.72e-01 90.9% 83.7%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.80e-01 90.9% 42.7%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.42e-01 96.0% 97.2%
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.51 39.0 3.38e-01 85.9% 89.9%
1s9qA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 45.0 3.49e-01 100.0% 77.2%
4qnsA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 42.0 4.16e-01 92.9% 87.7%
5uiyA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 42.0 4.17e-01 93.9% 89.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3242496 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.68 54.0 4.09e-01 85.9% 86.4%
4025746 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.65 60.0 4.99e-01 100.0% 87.1%
3377749 3843.1.1.15 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › ETR1_N 0.62 48.0 4.82e-01 80.8% 87.0%
3523264 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.60 55.0 4.99e-01 100.0% 88.5%
3770817 601.1.2.47 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL 0.60 54.0 4.95e-01 100.0% 88.5%
3499207 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.59 46.0 3.64e-01 84.8% 89.9%
3864123 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.59 54.0 4.93e-01 100.0% 88.5%
4978581 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.59 41.0 4.12e-01 85.9% 70.0%
3216047 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.59 46.0 3.65e-01 84.8% 88.8%
3173859 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.58 47.0 4.66e-01 100.0% 83.8%
3799055 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.58 53.0 3.76e-01 100.0% 61.4%
3610160 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.38e-01 100.0% 22.2%
3792118 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.57 51.0 4.59e-01 100.0% 80.0%
3217390 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 51.0 4.59e-01 100.0% 80.0%
3399141 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 51.0 4.72e-01 100.0% 84.0%
3628708 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 50.0 4.37e-01 100.0% 75.3%
3482665 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.56 40.0 4.32e-01 87.9% 88.2%
3645254 109.52.1.1 alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida 0.56 40.0 2.72e-01 78.8% 20.6%
3422162 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 50.0 4.21e-01 100.0% 61.8%
3456067 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 49.0 4.62e-01 100.0% 84.2%
3931890 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 47.0 4.32e-01 94.9% 79.2%
3616705 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 49.0 4.51e-01 100.0% 77.5%
3493369 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 49.0 4.53e-01 100.0% 84.0%
4195311 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 49.0 4.42e-01 100.0% 76.3%
3496542 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.54 48.0 4.56e-01 100.0% 87.5%
3744570 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.54 45.0 4.36e-01 91.9% 85.2%
3607639 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.54 48.0 3.27e-01 100.0% 54.9%
3249439 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 49.0 4.14e-01 100.0% 77.5%
3499941 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.54 48.0 4.41e-01 100.0% 84.6%
3246573 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.54 46.0 4.38e-01 96.0% 85.0%
4024559 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.53 40.0 3.33e-01 100.0% 44.4%
3878203 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 47.0 4.48e-01 100.0% 90.4%
3878199 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 48.0 4.15e-01 100.0% 67.3%
3484317 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.53 46.0 4.28e-01 100.0% 80.8%
2163596 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 44.0 3.49e-01 93.9% 70.0%
3166698 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 45.0 4.34e-01 96.0% 89.5%
3463947 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.52 47.0 4.12e-01 100.0% 73.3%
3737745 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 47.0 4.18e-01 100.0% 73.6%
3526451 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 44.0 4.16e-01 93.9% 80.0%
5049684 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.60e-01 98.0% 62.3%
3233521 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 43.0 3.97e-01 91.9% 76.2%
3931889 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 44.0 4.19e-01 93.9% 86.1%
3743385 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.52 37.0 3.06e-01 74.7% 43.4%
3503440 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 44.0 4.21e-01 94.9% 88.7%
3765679 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 44.0 4.27e-01 99.0% 84.3%
4025398 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 45.0 4.30e-01 100.0% 84.2%
3167164 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 46.0 4.09e-01 99.0% 70.0%
3901758 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 45.0 3.96e-01 100.0% 71.3%
4012797 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.51 43.0 4.17e-01 97.0% 82.6%
5038668 4266.2.1.0 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.51 41.0 4.35e-01 88.9% 94.4%
3992078 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 44.0 3.89e-01 98.0% 68.0%
3575853 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 44.0 4.13e-01 99.0% 82.4%
3815642 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.50 34.0 2.71e-01 74.7% 31.9%
3869400 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.50 43.0 4.16e-01 97.0% 83.5%