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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00129

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00129

Identity

Kingdom:
phage

Quality

81.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 3.18e-01 89.7% 82.2%
4r30A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 49.0 3.54e-01 100.0% 35.2%
5zxdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.87e-01 74.1% 86.0%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 2.81e-01 82.8% 78.3%
4finB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.82e-01 84.5% 74.1%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.55 33.0 3.48e-01 79.3% 66.7%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 40.0 3.24e-01 75.9% 68.7%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.55 39.0 3.40e-01 79.3% 84.8%
2c4mA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 44.0 2.72e-01 100.0% 85.9%
3k0yA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.53 37.0 2.96e-01 74.1% 88.0%
2xrfC00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 45.0 2.94e-01 100.0% 71.3%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 38.0 2.64e-01 77.6% 33.5%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 2.95e-01 81.0% 42.2%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.52 37.0 3.51e-01 77.6% 85.1%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.52 44.0 3.22e-01 100.0% 68.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.51 38.0 3.64e-01 89.7% 88.2%
2f02B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.72e-01 100.0% 18.5%
2j66A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 35.0 2.75e-01 74.1% 89.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3371830 207.1.1.97 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 0.63 51.0 2.76e-01 94.8% 5.5%
4021334 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 3.28e-01 93.1% 81.3%
4884651 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.59 44.0 2.97e-01 84.5% 87.5%
5066947 2486.1.1.1 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.58 50.0 3.27e-01 100.0% 29.7%
3239418 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.27e-01 96.6% 79.6%
3722340 3009.1.1.1 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.57 44.0 2.99e-01 87.9% 97.5%
3961491 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 45.0 2.91e-01 93.1% 67.7%
4424300 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 45.0 2.67e-01 93.1% 90.6%
3601706 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 2.75e-01 94.8% 83.6%
3971635 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.56 47.0 2.78e-01 94.8% 86.4%
3587957 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.56 45.0 2.67e-01 93.1% 90.6%
3807124 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.56 46.0 2.68e-01 94.8% 79.7%
4973795 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.56 46.0 4.13e-01 100.0% 77.8%
3180531 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.56 45.0 2.62e-01 93.1% 83.5%
3274669 2006.1.4.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.55 39.0 2.94e-01 77.6% 32.5%
5024745 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.55 42.0 2.94e-01 87.9% 84.7%
3227080 2006.1.6.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.54 44.0 3.22e-01 100.0% 79.5%
3249581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.54 42.0 2.76e-01 89.7% 92.0%
5038575 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.54 42.0 2.86e-01 91.4% 92.0%
3525340 2006.1.4.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.53 38.0 2.91e-01 79.3% 34.8%
3839570 601.51.1.3 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › FliS_cochap 0.53 37.0 2.92e-01 77.6% 78.6%
5077380 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 43.0 3.59e-01 100.0% 58.3%
4023995 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 40.0 2.36e-01 94.8% 86.9%
4817717 2004.1.1.1181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran_Xtn 0.51 40.0 3.45e-01 89.7% 64.6%
3993677 823.1.1.0 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.51 37.0 3.56e-01 81.0% 77.1%
4948799 281.1.1.0 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase 0.50 39.0 3.06e-01 94.8% 91.0%
D2 high residues 67-150
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 38.0 5.02e-01 100.0% 89.1%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.69e-01 98.8% 73.8%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 38.0 3.52e-01 100.0% 41.7%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 38.0 3.69e-01 100.0% 47.8%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 42.0 5.29e-01 100.0% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 39.0 4.91e-01 100.0% 95.7%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 40.0 4.76e-01 100.0% 81.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 40.0 5.11e-01 100.0% 98.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 5.15e-01 100.0% 96.2%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.64 42.0 4.88e-01 100.0% 96.6%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 3.78e-01 100.0% 66.3%
2x2sC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 50.0 4.19e-01 100.0% 95.9%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 50.0 4.25e-01 100.0% 91.4%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 49.0 4.24e-01 100.0% 96.4%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 49.0 4.35e-01 100.0% 99.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.99e-01 100.0% 90.9%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 49.0 4.18e-01 100.0% 98.6%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 49.0 4.37e-01 100.0% 91.9%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 35.0 3.45e-01 100.0% 60.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 4.16e-01 100.0% 96.7%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 48.0 4.08e-01 100.0% 93.0%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 36.0 3.53e-01 100.0% 60.9%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 48.0 4.25e-01 98.8% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.19e-01 100.0% 85.0%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 48.0 4.15e-01 100.0% 100.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 49.0 4.24e-01 100.0% 74.6%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 47.0 4.49e-01 100.0% 88.0%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 44.0 2.95e-01 96.4% 42.1%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 4.33e-01 100.0% 97.9%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 41.0 4.38e-01 100.0% 98.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 41.0 3.72e-01 85.7% 74.8%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.25e-01 98.8% 47.6%
4f4oC01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 29.0 3.44e-01 73.8% 84.2%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.63e-01 100.0% 59.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 43.0 5.24e-01 100.0% 85.2%
3414167 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 42.0 3.10e-01 100.0% 22.4%
3335404 4.1.1.350 beta barrels › SH3 › SH3 › SH3 › DUF7589 0.75 70.0 5.88e-01 100.0% 78.5%
3924213 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 40.0 3.89e-01 100.0% 48.4%
4075769 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.73 40.0 4.86e-01 100.0% 83.6%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 42.0 4.02e-01 100.0% 50.5%
4932427 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.73 40.0 3.97e-01 100.0% 51.1%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 44.0 3.21e-01 100.0% 24.3%
3922679 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.72 39.0 4.89e-01 98.8% 90.0%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.70 38.0 3.57e-01 100.0% 42.9%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.06e-01 100.0% 55.6%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 39.0 3.65e-01 100.0% 47.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 39.0 4.30e-01 100.0% 72.3%
3476336 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.66 46.0 4.95e-01 100.0% 87.1%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.35e-01 100.0% 63.0%
3629844 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.64 43.0 4.68e-01 90.5% 82.9%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 3.30e-01 100.0% 28.0%
3618387 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.62 45.0 4.07e-01 92.9% 55.7%
3987498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 39.0 3.91e-01 100.0% 62.4%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 45.0 4.75e-01 100.0% 86.7%
5010243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 31.0 4.05e-01 98.8% 100.0%
3501337 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.60 45.0 4.61e-01 100.0% 82.5%
3500684 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.60 38.0 3.97e-01 100.0% 67.5%
3354076 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 43.0 3.74e-01 100.0% 49.2%
3580039 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.59 41.0 3.31e-01 91.7% 37.5%
3257607 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.08e-01 100.0% 80.0%
3721062 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.56 41.0 4.13e-01 100.0% 77.6%
3618804 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.55 42.0 4.20e-01 91.7% 78.8%
4416756 11.46.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C-domain of Mg adhesin P110 › C-domain of Mg adhesin P110 0.55 42.0 3.75e-01 81.0% 71.7%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.93e-01 100.0% 74.1%
3194806 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 48.0 3.33e-01 100.0% 90.7%
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 32.0 3.20e-01 100.0% 53.3%
3385958 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.53 38.0 4.16e-01 100.0% 91.4%
3080538 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 38.0 3.59e-01 100.0% 63.4%
3375181 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 37.0 3.11e-01 100.0% 44.1%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 40.0 3.83e-01 100.0% 72.0%
4493566 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 41.0 3.64e-01 84.5% 72.2%
4011774 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 46.0 3.41e-01 100.0% 51.4%