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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00168
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00168
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-66
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 72.0 | 6.73e-01 | 100.0% | 80.0% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.81 | 56.0 | 4.09e-01 | 72.6% | 51.3% |
| 3aqbA00 | 1.20.120.1450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.77 | 54.0 | 4.12e-01 | 75.8% | 33.3% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.76 | 60.0 | 4.49e-01 | 83.9% | 37.6% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 66.0 | 4.45e-01 | 100.0% | 27.5% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 65.0 | 5.25e-01 | 95.2% | 93.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 61.0 | 5.66e-01 | 95.2% | 79.5% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.71 | 49.0 | 5.48e-01 | 74.2% | 93.8% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 60.0 | 5.12e-01 | 98.4% | 60.6% |
| 8sorA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 48.0 | 2.98e-01 | 71.0% | 24.2% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.70 | 61.0 | 4.46e-01 | 100.0% | 67.6% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.70 | 57.0 | 4.66e-01 | 90.3% | 50.4% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.69 | 50.0 | 4.41e-01 | 79.0% | 50.5% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 48.0 | 4.88e-01 | 74.2% | 77.0% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 56.0 | 5.69e-01 | 91.9% | 88.5% |
| 3ub8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 56.0 | 4.18e-01 | 90.3% | 67.5% |
| 3e98B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.68 | 60.0 | 4.35e-01 | 100.0% | 83.3% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 51.0 | 4.33e-01 | 88.7% | 48.1% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 50.0 | 5.44e-01 | 80.6% | 100.0% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.67 | 56.0 | 3.60e-01 | 100.0% | 18.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.67 | 54.0 | 5.06e-01 | 90.3% | 76.3% |
| 7cgfA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 40.0 | 2.67e-01 | 91.9% | 56.0% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.51 | 40.0 | 2.88e-01 | 90.3% | 52.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940953 | 109.4.1.623 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 | 0.85 | 74.0 | 4.14e-01 | 98.4% | 8.3% |
| 4949233 | 632.8.1.34 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › HisKA | 0.82 | 73.0 | 6.58e-01 | 100.0% | 80.0% |
| 437078 | 3713.1.1.1 ↗ | alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging | 0.79 | 72.0 | 6.29e-01 | 100.0% | 68.1% |
| 4311810 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 68.0 | 6.37e-01 | 96.8% | 86.7% |
| 3387239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 68.0 | 5.47e-01 | 100.0% | 55.0% |
| 4652719 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.76 | 64.0 | 5.54e-01 | 93.5% | 70.5% |
| 4156411 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 65.0 | 6.29e-01 | 100.0% | 94.3% |
| 3402327 | 3755.3.1.324 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 | 0.73 | 62.0 | 4.53e-01 | 95.2% | 55.3% |
| 4429835 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.73 | 58.0 | 5.03e-01 | 91.9% | 55.0% |
| 3949328 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.73 | 64.0 | 5.36e-01 | 100.0% | 60.0% |
| 4964878 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 62.0 | 5.98e-01 | 96.8% | 90.0% |
| 4937862 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.73 | 64.0 | 5.34e-01 | 100.0% | 59.1% |
| 3491418 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 62.0 | 5.89e-01 | 96.8% | 80.0% |
| 3987389 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.72 | 61.0 | 3.61e-01 | 95.2% | 12.9% |
| 4345287 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.69 | 58.0 | 5.03e-01 | 96.8% | 62.0% |
| 3615973 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 57.0 | 4.79e-01 | 100.0% | 54.8% |
| 3978513 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.67 | 57.0 | 5.37e-01 | 100.0% | 96.2% |
| 4531598 | 4970.1.1.14 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RRP36 | 0.67 | 57.0 | 4.29e-01 | 96.8% | 41.3% |
| 4340554 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.57 | 49.0 | 3.32e-01 | 98.4% | 60.4% |