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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00176
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00176
Identity
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-73
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00637__D7-72
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 38.0 | 2.99e-01 | 72.5% | 95.2% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.55 | 39.0 | 3.58e-01 | 100.0% | 55.8% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.42e-01 | 92.8% | 72.7% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.52e-01 | 100.0% | 85.1% |
| 2xzmR01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 2.91e-01 | 100.0% | 35.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266967 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.56 | 47.0 | 2.92e-01 | 95.7% | 26.5% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.54 | 36.0 | 3.28e-01 | 89.9% | 48.0% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 3.50e-01 | 92.8% | 60.0% |
| 3541739 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.53 | 40.0 | 3.12e-01 | 82.6% | 45.2% |
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.53 | 41.0 | 2.54e-01 | 89.9% | 69.2% |
| 2087183 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.32e-01 | 100.0% | 71.3% |
| 3371576 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 2.74e-01 | 100.0% | 27.4% |
| 3575495 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.51 | 43.0 | 3.65e-01 | 100.0% | 86.4% |
| 4549004 | 2003.1.2.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 | 0.50 | 40.0 | 2.64e-01 | 95.7% | 98.5% |
| 3573641 | 384.1.1.8 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › BPTI_nem | 0.50 | 35.0 | 3.40e-01 | 91.3% | 64.9% |
| 4117037 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.50 | 38.0 | 3.31e-01 | 84.1% | 78.3% |