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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00186
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.70 | 47.0 | 4.23e-01 | 100.0% | 50.0% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.66 | 58.0 | 5.18e-01 | 100.0% | 82.8% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 56.0 | 4.74e-01 | 100.0% | 91.8% |
| 1mdyA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.63 | 36.0 | 3.71e-01 | 88.4% | 57.4% |
| 3nlcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 55.0 | 3.77e-01 | 100.0% | 51.0% |
| 1u6zA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.62 | 40.0 | 3.01e-01 | 100.0% | 25.7% |
| 4kyqA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 51.0 | 3.72e-01 | 97.1% | 52.4% |
| 3di5A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 51.0 | 4.08e-01 | 100.0% | 61.1% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.59 | 52.0 | 4.22e-01 | 100.0% | 65.2% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 40.0 | 4.15e-01 | 100.0% | 76.9% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.58 | 41.0 | 3.25e-01 | 100.0% | 36.1% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 46.0 | 4.24e-01 | 92.8% | 84.0% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.54 | 43.0 | 3.64e-01 | 88.4% | 75.2% |
| 1ij5A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 46.0 | 3.72e-01 | 94.2% | 54.2% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 44.0 | 3.42e-01 | 91.3% | 42.7% |
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 45.0 | 3.39e-01 | 92.8% | 47.8% |
| 3n3dB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 42.0 | 2.93e-01 | 100.0% | 26.5% |
| 1dc1A02 | 1.10.238.90 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain | 0.53 | 45.0 | 4.19e-01 | 98.6% | 93.2% |
| 4mn0A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 39.0 | 2.93e-01 | 79.7% | 70.2% |
| 2h8oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 38.0 | 2.54e-01 | 100.0% | 19.1% |
| 1uurA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 44.0 | 4.14e-01 | 97.1% | 94.3% |
| 3cq4A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 37.0 | 3.09e-01 | 76.8% | 65.6% |
| 1nyaA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 41.0 | 3.08e-01 | 87.0% | 47.7% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 41.0 | 3.39e-01 | 100.0% | 80.9% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 45.0 | 3.68e-01 | 100.0% | 63.0% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.50 | 39.0 | 2.75e-01 | 91.3% | 63.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3702168 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.72 | 58.0 | 3.26e-01 | 87.0% | 92.8% |
| 4016849 | 633.4.1.7 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › TMD0_ABC | 0.72 | 44.0 | 3.15e-01 | 100.0% | 22.1% |
| None | — | 0.64 | 56.0 | 3.68e-01 | 100.0% | 40.7% | |
| 3516873 | 159.1.1.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › DUF1599 | 0.63 | 41.0 | 4.00e-01 | 100.0% | 58.7% |
| 5028611 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.61 | 46.0 | 3.57e-01 | 82.6% | 84.5% |
| 4025274 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 42.0 | 4.14e-01 | 73.9% | 68.0% |
| 3193166 | 632.6.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_fungi | 0.60 | 44.0 | 3.66e-01 | 81.2% | 66.9% |
| 1720178 | 1026.1.1.1 ↗ | alpha bundles › Rev protein › Rev protein › Rev protein › Borrelia_REV | 0.60 | 50.0 | 4.03e-01 | 100.0% | 47.1% |
| 5043376 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.59 | 45.0 | 3.59e-01 | 82.6% | 86.9% |
| 3703542 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 44.0 | 3.43e-01 | 100.0% | 39.3% |
| 3899800 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.57 | 42.0 | 3.22e-01 | 100.0% | 34.8% |
| 2036052 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.57 | 44.0 | 3.96e-01 | 84.1% | 79.2% |
| 3263308 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 42.0 | 3.82e-01 | 79.7% | 88.4% |
| 3458522 | 108.1.1.46 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Caleosin | 0.56 | 43.0 | 3.89e-01 | 82.6% | 93.7% |
| 4030617 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 37.0 | 3.74e-01 | 100.0% | 70.0% |
| 5016112 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 48.0 | 3.17e-01 | 100.0% | 91.9% |
| 3476119 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.55 | 37.0 | 3.51e-01 | 71.0% | 78.8% |
| 4028181 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.54 | 44.0 | 3.67e-01 | 95.7% | 89.6% |
| 4027458 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.54 | 42.0 | 3.64e-01 | 85.5% | 80.0% |
| 4940888 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.54 | 46.0 | 3.52e-01 | 100.0% | 72.0% |
| 3787643 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.78e-01 | 88.4% | 100.0% |
| 4141722 | 605.1.1.289 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF26892 | 0.53 | 42.0 | 3.79e-01 | 89.9% | 60.0% |
| 3922770 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.53 | 42.0 | 3.73e-01 | 88.4% | 87.6% |
| 3634672 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.53 | 41.0 | 3.55e-01 | 84.1% | 78.2% |
| 3482581 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 38.0 | 3.67e-01 | 75.4% | 87.5% |
| 3390488 | 109.4.1.937 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EDRF1 | 0.53 | 46.0 | 3.22e-01 | 100.0% | 39.6% |
| 3224409 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 42.0 | 3.72e-01 | 88.4% | 79.0% |
| 3514426 | 108.1.1.36 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 | 0.53 | 41.0 | 3.76e-01 | 87.0% | 82.1% |
| 3704684 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 41.0 | 3.75e-01 | 88.4% | 78.9% |
| 2100896 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.52 | 38.0 | 3.85e-01 | 91.3% | 77.6% |
| 3615686 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 40.0 | 3.44e-01 | 82.6% | 83.5% |
| 3916205 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 3.08e-01 | 98.6% | 38.0% |
| 2722822 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.52 | 41.0 | 3.57e-01 | 87.0% | 88.8% |
| 4030148 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.51 | 40.0 | 3.60e-01 | 85.5% | 70.4% |
| 5003589 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.51 | 36.0 | 3.42e-01 | 75.4% | 75.3% |
| None | — | 0.51 | 40.0 | 3.58e-01 | 87.0% | 93.0% | |
| 4948874 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.51 | 36.0 | 2.51e-01 | 88.4% | 20.6% |
| 4982733 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.57e-01 | 84.1% | 90.0% |
| 3332367 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.50 | 38.0 | 3.44e-01 | 82.6% | 73.0% |
| 5055615 | 2003.1.2.299 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD-depend_C | 0.50 | 36.0 | 2.27e-01 | 94.2% | 12.1% |
| 4014099 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.50 | 41.0 | 3.71e-01 | 91.3% | 72.6% |