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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00215

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.63 39.0 3.85e-01 78.0% 57.1%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.60 41.0 4.21e-01 71.2% 100.0%
5lp7E01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 45.0 3.10e-01 81.4% 61.1%
4hr6B02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.58 40.0 3.62e-01 100.0% 51.2%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.57 45.0 2.80e-01 91.5% 46.6%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.57 37.0 3.50e-01 78.0% 54.9%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 46.0 3.12e-01 98.3% 80.4%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 42.0 3.69e-01 93.2% 57.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 2.98e-01 94.9% 72.3%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 41.0 2.59e-01 98.3% 84.1%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 41.0 3.71e-01 100.0% 64.3%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 43.0 2.77e-01 96.6% 60.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734607 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.61 38.0 3.14e-01 93.2% 36.2%
3679276 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.59 38.0 3.80e-01 100.0% 61.9%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.58 44.0 3.86e-01 83.1% 92.2%
3322159 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.58 37.0 3.05e-01 79.7% 32.2%
3732236 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.00e-01 88.1% 84.8%
3510072 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.57 43.0 2.72e-01 79.7% 49.5%
3423636 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 36.0 3.11e-01 78.0% 41.1%
4087557 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.55 40.0 2.54e-01 76.3% 55.9%
4356813 6043.2.1.0 ↗ a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain 0.54 41.0 3.42e-01 89.8% 96.8%
3554597 109.4.1.1787 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III 0.54 40.0 2.50e-01 78.0% 22.6%
3940234 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 42.0 2.79e-01 91.5% 23.9%