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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00231

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00231

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-48
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d00A02 3.30.60.80 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 46.0 5.36e-01 82.2% 86.7%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 47.0 5.18e-01 84.4% 100.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 53.0 3.90e-01 100.0% 35.8%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 41.0 4.38e-01 86.7% 97.2%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.59 45.0 4.58e-01 95.6% 90.7%
5tabA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 43.0 4.06e-01 80.0% 66.0%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.56 40.0 3.97e-01 88.9% 74.5%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 45.0 4.05e-01 93.3% 68.8%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 39.0 3.58e-01 77.8% 70.0%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.54 44.0 3.79e-01 100.0% 58.0%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.91e-01 86.7% 82.1%
3aslA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 42.0 3.73e-01 88.9% 60.3%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.53 38.0 3.63e-01 77.8% 73.6%
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.91e-01 86.7% 87.5%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 40.0 3.74e-01 95.6% 68.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243122 375.1.1.250 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAM76 0.78 52.0 3.93e-01 95.6% 30.1%
3392574 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 63.0 6.40e-01 100.0% 91.1%
3742724 375.1.1.221 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 0.72 53.0 5.91e-01 82.2% 100.0%
5050300 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.72e-01 91.1% 100.0%
5027043 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.69 45.0 4.60e-01 80.0% 68.9%
3425436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.93e-01 91.1% 100.0%
5073000 4123.1.1.0 ↗ few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.68 54.0 5.67e-01 97.8% 100.0%
3698517 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.67 53.0 5.17e-01 88.9% 100.0%
4946661 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 37.0 3.51e-01 84.4% 41.8%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.65 52.0 5.42e-01 95.6% 100.0%
3701455 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 53.0 5.01e-01 97.8% 76.4%
5018523 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 47.0 4.10e-01 95.6% 51.4%
3604970 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.71e-01 77.8% 100.0%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.63 50.0 5.21e-01 95.6% 100.0%
4031664 375.1.1.75 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 0.62 47.0 4.91e-01 82.2% 100.0%
3397474 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.62 48.0 5.03e-01 93.3% 97.5%
3700516 376.1.3.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CRD 0.62 53.0 3.66e-01 100.0% 35.6%
3819953 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 49.0 4.98e-01 93.3% 93.3%
1874307 375.1.1.65 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N 0.59 41.0 4.38e-01 86.7% 97.2%
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 45.0 4.69e-01 91.1% 100.0%
3918443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 41.0 4.18e-01 86.7% 77.8%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 47.0 4.25e-01 100.0% 67.7%
3707814 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 41.0 4.45e-01 77.8% 100.0%
3643185 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 44.0 4.58e-01 86.7% 100.0%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.55 43.0 4.53e-01 91.1% 100.0%
3717231 376.1.3.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW 0.55 39.0 3.73e-01 77.8% 67.3%
3785476 375.1.1.57 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N 0.54 40.0 4.05e-01 86.7% 82.2%
3733006 375.1.1.57 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N 0.54 39.0 3.79e-01 77.8% 76.0%
5071927 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 44.0 4.15e-01 95.6% 80.0%
3246855 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 35.0 2.85e-01 97.8% 35.6%
4099915 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.52 34.0 3.68e-01 86.7% 88.6%
4085524 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.58e-01 86.7% 88.6%
D2 high residues 53-148
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 4.38e-01 76.0% 84.8%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 38.0 3.40e-01 80.2% 45.7%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 46.0 3.23e-01 87.5% 90.7%
3h3iA00 2.40.128.220 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.80e-01 80.2% 87.7%
5kbzB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.55 40.0 2.76e-01 75.0% 76.2%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.55 43.0 3.97e-01 97.9% 64.8%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 38.0 2.61e-01 74.0% 95.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 4.00e-01 70.8% 89.2%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 43.0 3.26e-01 89.6% 46.7%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 3.01e-01 89.6% 88.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 38.0 3.49e-01 93.8% 57.0%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.97e-01 89.6% 86.7%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 45.0 3.96e-01 99.0% 82.4%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 41.0 3.72e-01 91.7% 64.1%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 42.0 3.36e-01 87.5% 53.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 45.0 3.92e-01 100.0% 71.3%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 38.0 3.16e-01 81.2% 81.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 42.0 3.62e-01 89.6% 87.4%
7rlrA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 3.11e-01 89.6% 90.1%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.50 35.0 2.93e-01 72.9% 81.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009756 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.75 41.0 3.73e-01 81.2% 41.6%
3276677 5.1.3.131 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Det1 0.58 47.0 3.08e-01 91.7% 88.0%
3271023 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.57 40.0 3.29e-01 71.9% 63.4%
3397367 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.57 40.0 3.34e-01 72.9% 66.7%
3230630 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 2.76e-01 72.9% 25.3%
3826655 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 34.0 2.44e-01 77.1% 20.3%
3434074 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 44.0 3.67e-01 87.5% 59.4%
2410020 881.1.1.4 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB 0.54 42.0 3.67e-01 83.3% 61.5%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 37.0 4.04e-01 87.5% 85.0%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 42.0 3.53e-01 83.3% 72.5%
3955158 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 39.0 3.56e-01 89.6% 56.0%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 44.0 3.53e-01 88.5% 82.4%
3278991 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 41.0 3.41e-01 100.0% 47.3%
5028155 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 42.0 3.61e-01 85.4% 58.7%
3221575 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 42.0 3.04e-01 87.5% 98.0%
3517320 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 40.0 3.85e-01 88.5% 70.9%
1491977 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.52 42.0 3.43e-01 86.5% 53.1%
3664013 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 38.0 2.72e-01 77.1% 63.7%
3966459 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 43.0 3.81e-01 90.6% 67.9%
4655950 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.52 35.0 3.36e-01 86.5% 59.1%
3303563 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 40.0 3.45e-01 84.4% 71.2%
3962603 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 4.05e-01 88.5% 87.3%
3822726 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 42.0 2.96e-01 88.5% 91.7%
4940119 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 40.0 3.47e-01 84.4% 57.4%
4954301 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 39.0 3.42e-01 82.3% 71.3%
3972681 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 35.0 3.60e-01 85.4% 72.3%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.51 31.0 3.11e-01 76.0% 56.0%
4968514 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.51 41.0 3.79e-01 87.5% 68.8%
3738450 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.51 35.0 3.06e-01 96.9% 46.6%
2516709 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.50 41.0 3.41e-01 89.6% 69.9%
4983936 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.50 42.0 3.81e-01 93.8% 72.6%
3269423 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 38.0 3.36e-01 84.4% 77.4%