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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00281
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00281
Identity
- Kingdom:
- phage
Quality
55.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-57
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vuqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.96 | 88.0 | 5.57e-01 | 100.0% | 23.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.92 | 82.0 | 6.83e-01 | 97.6% | 61.2% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.91 | 81.0 | 5.74e-01 | 100.0% | 35.3% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.91 | 82.0 | 5.85e-01 | 100.0% | 36.9% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.89 | 79.0 | 5.51e-01 | 100.0% | 32.8% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.88 | 70.0 | 4.61e-01 | 90.2% | 23.2% |
| 1xnpA02 | 6.10.250.680 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.88 | 72.0 | 5.52e-01 | 92.7% | 41.8% |
| 4fxdA06 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.87 | 76.0 | 5.02e-01 | 100.0% | 25.6% |
| 4fvmA07 | 1.20.1280.310 | Mainly Alpha › Up-down Bundle › Monooxygenase › B family DNA polymerase, thumb domain, four helix bundle | 0.87 | 76.0 | 6.53e-01 | 100.0% | 63.1% |
| 1yq1A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.86 | 55.0 | 3.87e-01 | 73.2% | 24.1% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.85 | 74.0 | 5.39e-01 | 100.0% | 36.6% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.83 | 70.0 | 4.21e-01 | 100.0% | 13.9% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 65.0 | 5.89e-01 | 90.2% | 63.6% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.82 | 72.0 | 5.37e-01 | 100.0% | 40.2% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.81 | 74.0 | 5.15e-01 | 100.0% | 94.4% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 63.0 | 6.36e-01 | 95.1% | 90.2% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.79 | 66.0 | 4.28e-01 | 95.1% | 80.8% |
| 4gxwB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.78 | 68.0 | 3.94e-01 | 100.0% | 11.5% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.78 | 65.0 | 5.13e-01 | 95.1% | 45.3% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.76 | 62.0 | 5.49e-01 | 100.0% | 62.1% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 66.0 | 5.91e-01 | 100.0% | 77.6% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.75 | 66.0 | 4.48e-01 | 100.0% | 30.3% |
| 2fhxA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.74 | 60.0 | 3.72e-01 | 100.0% | 15.5% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.74 | 62.0 | 5.07e-01 | 100.0% | 50.6% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.74 | 64.0 | 4.51e-01 | 100.0% | 33.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.73 | 58.0 | 4.09e-01 | 100.0% | 28.3% |
| 1rqgA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.72 | 58.0 | 3.87e-01 | 90.2% | 71.4% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.72 | 60.0 | 5.90e-01 | 95.1% | 97.8% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.72 | 62.0 | 4.84e-01 | 97.6% | 55.3% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.70 | 59.0 | 3.54e-01 | 97.6% | 14.6% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.70 | 62.0 | 3.56e-01 | 100.0% | 12.5% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.68 | 50.0 | 5.10e-01 | 100.0% | 100.0% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.66 | 55.0 | 4.30e-01 | 97.6% | 53.7% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 49.0 | 3.67e-01 | 92.7% | 34.2% |
| 2y0eB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 45.0 | 2.98e-01 | 97.6% | 36.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058780 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.97 | 90.0 | 6.44e-01 | 100.0% | 39.0% |
| 3744658 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.96 | 89.0 | 4.88e-01 | 100.0% | 8.0% |
| 3230196 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.96 | 88.0 | 6.11e-01 | 100.0% | 34.2% |
| 3996708 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.95 | 87.0 | 5.92e-01 | 100.0% | 31.5% |
| 3797030 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.95 | 88.0 | 5.32e-01 | 100.0% | 18.6% |
| 3936633 | 2004.1.1.33 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind | 0.93 | 84.0 | 5.01e-01 | 100.0% | 15.5% |
| 2625677 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.91 | 82.0 | 5.85e-01 | 100.0% | 36.9% |
| 3586489 | 2004.1.1.33 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind | 0.91 | 80.0 | 4.59e-01 | 100.0% | 11.1% |
| 3619816 | 2004.1.1.33 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind | 0.90 | 79.0 | 4.75e-01 | 100.0% | 15.5% |
| 4044098 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.88 | 80.0 | 4.45e-01 | 100.0% | 8.8% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.87 | 76.0 | 4.74e-01 | 100.0% | 18.8% |
| 3215346 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.87 | 75.0 | 7.02e-01 | 100.0% | 80.0% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.85 | 75.0 | 5.54e-01 | 100.0% | 39.0% |
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.85 | 75.0 | 6.30e-01 | 100.0% | 58.6% |
| 4101335 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.85 | 74.0 | 4.59e-01 | 100.0% | 18.2% |
| 3416802 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.83 | 72.0 | 6.11e-01 | 100.0% | 58.6% |
| 3242821 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.83 | 71.0 | 6.31e-01 | 100.0% | 68.3% |
| 3567180 | 4177.1.1.61 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C | 0.82 | 73.0 | 4.44e-01 | 100.0% | 17.9% |
| 2570270 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.82 | 71.0 | 6.59e-01 | 100.0% | 76.9% |
| 3614039 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.82 | 60.0 | 3.30e-01 | 85.4% | 5.5% |
| 4994813 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.81 | 70.0 | 3.93e-01 | 100.0% | 9.1% |
| 4266228 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.80 | 68.0 | 3.99e-01 | 100.0% | 11.7% |
| 3713201 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.80 | 71.0 | 4.82e-01 | 100.0% | 47.6% |
| 3178498 | 2484.1.1.57 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt | 0.80 | 69.0 | 4.11e-01 | 100.0% | 86.4% |
| 3960393 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 67.0 | 4.83e-01 | 100.0% | 33.3% |
| 4945035 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 69.0 | 6.14e-01 | 100.0% | 71.7% |
| 4497642 | 150.1.2.20 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Rubrerythrin | 0.79 | 65.0 | 3.90e-01 | 100.0% | 12.8% |
| 3226467 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.78 | 65.0 | 4.62e-01 | 100.0% | 30.4% |
| 4030523 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.78 | 65.0 | 4.15e-01 | 100.0% | 27.0% |
| 3333490 | 4207.1.1.86 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › BPS1 | 0.77 | 68.0 | 5.18e-01 | 100.0% | 44.2% |
| 3531403 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.77 | 69.0 | 6.44e-01 | 100.0% | 84.0% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.75 | 66.0 | 5.02e-01 | 100.0% | 73.7% |
| 3218889 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 65.0 | 4.70e-01 | 100.0% | 34.5% |
| 3459724 | 604.1.1.102 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 | 0.75 | 65.0 | 4.79e-01 | 100.0% | 53.9% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.75 | 58.0 | 3.70e-01 | 100.0% | 16.9% |
| 4385616 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 63.0 | 4.57e-01 | 100.0% | 34.2% |
| 4600185 | 3602.1.1.15 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF444 | 0.73 | 65.0 | 5.29e-01 | 100.0% | 54.7% |
| 3903553 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.72 | 63.0 | 4.56e-01 | 100.0% | 35.7% |
| 3563618 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.72 | 62.0 | 4.58e-01 | 100.0% | 38.2% |
| 4034201 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.71 | 63.0 | 5.52e-01 | 100.0% | 68.3% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 61.0 | 4.43e-01 | 100.0% | 35.0% |
| 3823336 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.69 | 59.0 | 4.30e-01 | 97.6% | 40.0% |
| 3828 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.67 | 58.0 | 4.22e-01 | 97.6% | 34.8% |
| 3934503 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.67 | 56.0 | 5.27e-01 | 95.1% | 100.0% |
| 3594129 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 53.0 | 3.42e-01 | 97.6% | 20.0% |