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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00320
Bact-VirP0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00320
Identity
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-164
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00105__D20-173
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13529.14 | Peptidase_C39_2 | 34.1 | 4.80e-08 | 90.1% | 85.6% |
| PF03412.22 best | Peptidase_C39 | 78.4 | 6.30e-22 | 90.1% | 82.0% |
| PF12385.15 | Peptidase_C70 | 26.6 | 6.90e-06 | 84.5% | 63.1% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.92 | 76.0 | 7.69e-01 | 100.0% | 85.8% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.91 | 77.0 | 8.09e-01 | 100.0% | 94.7% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.88 | 71.0 | 7.44e-01 | 100.0% | 90.8% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.86 | 61.0 | 6.51e-01 | 100.0% | 82.4% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.85 | 69.0 | 7.40e-01 | 100.0% | 96.0% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.73 | 68.0 | 6.35e-01 | 100.0% | 87.9% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 31.0 | 4.40e-01 | 75.4% | 92.2% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.67 | 59.0 | 5.12e-01 | 99.3% | 62.4% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 29.0 | 4.18e-01 | 92.3% | 93.8% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 31.0 | 4.00e-01 | 91.5% | 84.8% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.62 | 55.0 | 4.98e-01 | 100.0% | 73.0% |
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.62 | 43.0 | 4.67e-01 | 98.6% | 84.3% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 41.0 | 4.58e-01 | 71.1% | 85.7% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.61 | 44.0 | 4.65e-01 | 100.0% | 83.3% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.61 | 54.0 | 4.73e-01 | 100.0% | 64.0% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 55.0 | 4.31e-01 | 100.0% | 96.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 32.0 | 4.29e-01 | 98.6% | 98.6% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 55.0 | 4.17e-01 | 100.0% | 95.2% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 31.0 | 4.07e-01 | 93.0% | 97.4% |
| 2oviA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.55 | 37.0 | 3.62e-01 | 89.4% | 62.0% |
| 3a7sA00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.54 | 43.0 | 3.87e-01 | 85.9% | 99.5% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 38.0 | 2.94e-01 | 79.6% | 33.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.95 | 76.0 | 7.80e-01 | 100.0% | 85.9% |
| 5056599 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.90 | 83.0 | 8.15e-01 | 100.0% | 90.7% |
| 4405252 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.88 | 74.0 | 7.50e-01 | 100.0% | 87.9% |
| 5035935 | 219.1.1.26 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin | 0.88 | 84.0 | 7.57e-01 | 100.0% | 87.0% |
| 3972041 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.86 | 76.0 | 7.31e-01 | 100.0% | 82.5% |
| 3502919 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.83 | 80.0 | 6.96e-01 | 100.0% | 89.9% |
| 4927532 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.82 | 69.0 | 7.41e-01 | 96.5% | 100.0% |
| 3278485 | 219.1.1.49 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C70 | 0.80 | 75.0 | 6.78e-01 | 100.0% | 75.7% |
| 3973655 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.74 | 70.0 | 6.04e-01 | 98.6% | 81.5% |
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.73 | 68.0 | 6.35e-01 | 100.0% | 87.9% |
| 3474715 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 30.0 | 4.34e-01 | 93.0% | 86.2% |
| 3913334 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 33.0 | 4.55e-01 | 75.4% | 90.0% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.68 | 29.0 | 4.15e-01 | 87.3% | 86.2% |
| 3881117 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 43.0 | 5.03e-01 | 95.8% | 93.0% |
| 3261235 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 39.0 | 4.80e-01 | 85.2% | 96.5% |
| 3547106 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 40.0 | 4.89e-01 | 85.2% | 96.7% |
| 3765274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 39.0 | 4.75e-01 | 99.3% | 94.4% |
| 3389169 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 35.0 | 4.44e-01 | 99.3% | 91.8% |
| 4317035 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 36.0 | 4.46e-01 | 99.3% | 94.1% |
| 3576438 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 37.0 | 4.52e-01 | 85.9% | 94.4% |
| 3881119 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 34.0 | 4.28e-01 | 86.6% | 95.0% |
| 4583705 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 56.0 | 4.41e-01 | 100.0% | 89.0% |
| 3999725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 35.0 | 4.37e-01 | 99.3% | 94.1% |
| 3244430 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 40.0 | 4.48e-01 | 93.7% | 90.5% |
| 3389177 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 39.0 | 4.49e-01 | 94.4% | 94.0% |
| 4147056 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 37.0 | 4.31e-01 | 93.7% | 90.0% |
| 3877485 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 35.0 | 4.33e-01 | 86.6% | 97.6% |
| 3840679 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 35.0 | 4.13e-01 | 88.0% | 88.4% |
| 3881123 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 34.0 | 4.16e-01 | 86.6% | 95.3% |
| 3883159 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 35.0 | 4.20e-01 | 88.7% | 94.4% |
| 3481729 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.58 | 42.0 | 4.57e-01 | 99.3% | 90.0% |
| 3768094 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 36.0 | 4.13e-01 | 94.4% | 85.7% |
| 4002896 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 35.0 | 4.22e-01 | 87.3% | 94.4% |
| 3765289 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 35.0 | 4.21e-01 | 85.9% | 95.6% |
| 3576128 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.64e-01 | 95.8% | 94.8% |
| 3881124 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 33.0 | 4.02e-01 | 99.3% | 91.1% |
D2
high
residues 195-321
Domain cluster:
rep: IMGVR_UViG_3300018018_000296-3300018018-Ga0187886_10175987__D7-103
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ezxA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 29.0 | 3.46e-01 | 85.8% | 61.6% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 50.0 | 4.52e-01 | 85.8% | 72.5% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 37.0 | 4.27e-01 | 71.7% | 83.5% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 40.0 | 3.28e-01 | 87.4% | 40.7% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 44.0 | 4.19e-01 | 85.0% | 95.3% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.55 | 44.0 | 3.45e-01 | 86.6% | 79.8% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.54 | 46.0 | 3.38e-01 | 94.5% | 97.2% |
| 3c7mA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 40.0 | 3.49e-01 | 78.7% | 62.6% |
| 1ifwA00 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.53 | 31.0 | 3.56e-01 | 86.6% | 78.3% |
| 1hxaA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 44.0 | 3.23e-01 | 92.9% | 68.9% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 38.0 | 3.07e-01 | 75.6% | 75.4% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.52 | 27.0 | 3.65e-01 | 83.5% | 94.2% |
| 5kf6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 37.0 | 2.95e-01 | 73.2% | 87.8% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 38.0 | 2.58e-01 | 78.7% | 50.5% |
| 8h4pA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 43.0 | 3.32e-01 | 94.5% | 81.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3384740 | 3016.1.1.24 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › UVB_sens_C | 0.62 | 46.0 | 4.86e-01 | 77.2% | 94.5% |
| 1719256 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.61 | 47.0 | 4.12e-01 | 81.9% | 83.2% |
| 4982261 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 47.0 | 3.52e-01 | 82.7% | 52.5% |
| 3283566 | 191.1.1.8 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_33 | 0.56 | 40.0 | 3.88e-01 | 72.4% | 82.9% |
| 3919700 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.56 | 43.0 | 2.95e-01 | 80.3% | 70.7% |
| 4596871 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.55 | 45.0 | 3.40e-01 | 86.6% | 81.6% |
| 5060007 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.53 | 30.0 | 2.93e-01 | 84.3% | 51.1% |
| 5034715 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.52 | 42.0 | 3.31e-01 | 86.6% | 79.9% |
| 4089920 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.51 | 44.0 | 3.34e-01 | 97.6% | 81.2% |
| 5074147 | 304.48.1.20 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 | 0.50 | 39.0 | 3.18e-01 | 81.1% | 71.3% |
| 3322329 | 3238.1.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF | 0.50 | 42.0 | 3.51e-01 | 100.0% | 51.6% |
| 3683073 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.50 | 44.0 | 3.36e-01 | 100.0% | 77.9% |
| 4248670 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.50 | 44.0 | 3.31e-01 | 100.0% | 77.4% |