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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00436

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00436

Identity

Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-108
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 34.0 3.96e-01 84.1% 90.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3172875 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 43.0 4.29e-01 87.9% 83.6%
4941241 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 22.0 3.05e-01 84.1% 80.0%
D2 high residues 116-166
PDB
CATH (85)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.90 81.0 7.53e-01 98.0% 79.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 76.0 7.23e-01 98.0% 81.7%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 80.0 7.67e-01 100.0% 93.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 80.0 7.71e-01 100.0% 89.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.87 78.0 7.33e-01 100.0% 82.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.86 77.0 6.76e-01 100.0% 78.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 73.0 6.65e-01 100.0% 72.7%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.85 78.0 6.23e-01 100.0% 62.1%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 77.0 6.62e-01 100.0% 67.5%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.84 75.0 5.47e-01 100.0% 62.4%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 71.0 6.76e-01 98.0% 81.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 73.0 7.45e-01 98.0% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 70.0 6.12e-01 100.0% 64.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 6.97e-01 100.0% 87.5%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 75.0 5.58e-01 100.0% 46.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 73.0 6.52e-01 100.0% 71.8%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 73.0 6.23e-01 100.0% 70.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.13e-01 100.0% 72.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 73.0 6.42e-01 100.0% 81.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 72.0 5.57e-01 100.0% 54.6%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 67.0 6.42e-01 94.1% 79.7%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 72.0 6.01e-01 100.0% 60.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 71.0 6.77e-01 100.0% 84.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.81e-01 98.0% 98.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 69.0 6.58e-01 98.0% 96.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 71.0 6.13e-01 100.0% 86.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 69.0 6.36e-01 100.0% 78.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 5.90e-01 96.1% 93.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 67.0 6.15e-01 100.0% 89.6%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.75 63.0 5.64e-01 98.0% 88.2%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 64.0 6.00e-01 100.0% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 5.02e-01 100.0% 49.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.74 63.0 5.86e-01 100.0% 80.6%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.94e-01 98.0% 76.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.71 60.0 6.06e-01 98.0% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.09e-01 100.0% 69.9%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.68 47.0 3.85e-01 74.5% 92.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 5.02e-01 82.4% 86.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.67 52.0 4.07e-01 86.3% 39.8%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.93e-01 100.0% 87.5%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 4.24e-01 86.3% 82.6%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 53.0 4.11e-01 90.2% 78.0%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 54.0 3.30e-01 96.1% 45.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.65 54.0 4.63e-01 100.0% 87.8%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 50.0 4.46e-01 86.3% 73.3%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 51.0 4.86e-01 96.1% 84.8%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 4.27e-01 100.0% 95.9%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 51.0 3.19e-01 92.2% 24.9%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 52.0 3.09e-01 96.1% 37.4%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 3.93e-01 86.3% 49.0%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 46.0 4.09e-01 82.4% 92.4%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 4.62e-01 90.2% 84.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 52.0 3.37e-01 100.0% 51.7%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.95e-01 98.0% 99.2%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.61 46.0 4.21e-01 84.3% 71.4%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.43e-01 80.4% 96.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 4.43e-01 86.3% 77.0%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.85e-01 100.0% 65.5%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 3.55e-01 88.2% 64.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.60 46.0 4.57e-01 94.1% 81.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 46.0 4.27e-01 86.3% 68.7%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.60 48.0 3.90e-01 90.2% 52.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 45.0 4.10e-01 86.3% 86.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.24e-01 94.1% 78.7%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 3.66e-01 86.3% 44.0%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.60 48.0 3.42e-01 96.1% 41.7%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 3.80e-01 86.3% 83.5%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.20e-01 76.5% 92.8%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 49.0 4.26e-01 100.0% 67.5%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 41.0 3.28e-01 80.4% 37.8%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.30e-01 86.3% 57.4%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.57 43.0 3.55e-01 92.2% 73.5%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.44e-01 84.3% 47.2%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.55e-01 80.4% 94.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 4.08e-01 90.2% 79.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 3.16e-01 72.5% 97.8%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.63e-01 86.3% 98.7%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.16e-01 70.6% 92.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 41.0 3.38e-01 92.2% 88.5%
2jtdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 2.86e-01 72.5% 68.0%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 43.0 3.42e-01 100.0% 82.3%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 41.0 3.26e-01 92.2% 79.2%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 2.91e-01 84.3% 33.8%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.66e-01 78.4% 28.7%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 44.0 3.52e-01 100.0% 94.3%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415020 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.96 87.0 7.27e-01 100.0% 61.3%
3555930 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.95 85.0 7.53e-01 100.0% 70.0%
3885050 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.95 85.0 5.64e-01 100.0% 28.0%
3519125 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.94 80.0 8.12e-01 98.0% 92.0%
3756428 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.94 85.0 6.58e-01 100.0% 49.0%
3486495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.94 85.0 5.61e-01 100.0% 28.0%
3938261 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.94 84.0 5.82e-01 100.0% 32.7%
3274582 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.94 85.0 8.25e-01 100.0% 89.1%
3476179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.94 84.0 6.66e-01 100.0% 51.6%
4547820 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.94 84.0 6.43e-01 100.0% 46.7%
3580609 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.94 84.0 7.70e-01 100.0% 76.6%
4002679 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.94 80.0 5.91e-01 96.1% 39.2%
3619215 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.93 83.0 6.47e-01 100.0% 49.0%
4203592 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.93 85.0 7.70e-01 98.0% 78.5%
3555931 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.92 82.0 6.13e-01 100.0% 42.6%
4029093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.92 79.0 5.45e-01 100.0% 30.3%
4059465 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.92 86.0 7.69e-01 100.0% 75.0%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.92 81.0 7.94e-01 98.0% 88.9%
3866505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.92 82.0 7.98e-01 100.0% 89.1%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.92 85.0 7.98e-01 100.0% 85.0%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.92 83.0 8.06e-01 100.0% 89.1%
5042892 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.91 84.0 7.95e-01 100.0% 85.0%
4112177 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.91 83.0 7.62e-01 100.0% 78.5%
3486496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 77.0 7.56e-01 98.0% 85.5%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.91 84.0 7.26e-01 100.0% 68.0%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.90 84.0 6.18e-01 100.0% 45.8%
4984882 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.90 83.0 7.39e-01 100.0% 78.6%
4932609 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 83.0 7.55e-01 100.0% 78.5%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.90 84.0 5.73e-01 100.0% 34.8%
3519126 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 80.0 6.74e-01 100.0% 61.3%
4942163 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 80.0 7.27e-01 100.0% 75.4%
4461457 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 79.0 7.27e-01 98.0% 76.6%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 81.0 5.90e-01 100.0% 40.8%
3885049 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.89 79.0 7.69e-01 98.0% 89.1%
3751502 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.89 79.0 7.01e-01 96.1% 72.9%
3237859 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 78.0 7.62e-01 100.0% 89.1%
3222146 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.89 78.0 7.13e-01 100.0% 75.4%
3264807 4.1.1.299 beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.88 80.0 6.03e-01 100.0% 88.7%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 77.0 5.73e-01 100.0% 40.8%
3302816 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.88 79.0 5.78e-01 100.0% 86.9%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.88 80.0 7.85e-01 98.0% 92.6%
3939941 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.87 79.0 5.75e-01 100.0% 88.5%
3821922 4.1.1.299 beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.87 79.0 5.83e-01 100.0% 91.2%
3649839 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.87 79.0 5.82e-01 100.0% 90.4%
4024912 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.87 80.0 5.94e-01 100.0% 86.7%
3707634 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 75.0 7.35e-01 98.0% 87.3%
3097036 4.1.1.299 beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.87 80.0 6.04e-01 100.0% 87.6%
3675511 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.87 80.0 6.75e-01 100.0% 63.7%
1394554 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.87 78.0 7.24e-01 100.0% 79.7%
3495880 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.87 80.0 4.59e-01 100.0% 24.2%
3498983 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 80.0 4.59e-01 100.0% 24.2%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.86 79.0 5.94e-01 100.0% 44.3%
3287628 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 76.0 7.05e-01 98.0% 93.8%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.86 76.0 5.16e-01 100.0% 29.7%
3820065 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 74.0 7.30e-01 100.0% 89.1%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.86 80.0 7.55e-01 100.0% 86.4%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 77.0 7.31e-01 100.0% 88.3%
3926175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 77.0 6.44e-01 100.0% 61.2%
4153457 4.1.1.299 beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.85 77.0 5.53e-01 100.0% 89.6%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.85 78.0 6.91e-01 100.0% 72.9%
3931905 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 78.0 5.82e-01 100.0% 44.3%
3819340 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.84 77.0 5.72e-01 100.0% 87.5%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 75.0 7.29e-01 98.0% 89.1%
3922903 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.84 76.0 7.17e-01 100.0% 86.7%
3579591 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.83 74.0 7.28e-01 100.0% 90.9%
146236 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.83 75.0 5.80e-01 100.0% 50.9%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.83 75.0 6.54e-01 100.0% 69.3%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 72.0 6.40e-01 100.0% 75.7%
3898370 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 72.0 6.91e-01 98.0% 100.0%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 71.0 7.22e-01 98.0% 98.0%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 6.96e-01 100.0% 85.0%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 71.0 6.29e-01 100.0% 75.7%
4181687 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.81 75.0 5.80e-01 100.0% 63.1%
4026282 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 72.0 5.89e-01 100.0% 55.6%
3706223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 5.71e-01 100.0% 49.5%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 6.71e-01 100.0% 78.5%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 73.0 6.38e-01 100.0% 68.0%
3607985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 72.0 5.65e-01 100.0% 49.5%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 69.0 3.96e-01 96.1% 11.1%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.80 72.0 6.28e-01 100.0% 76.0%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.25e-01 100.0% 84.0%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.75e-01 100.0% 85.0%
2126408 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.79 69.0 5.94e-01 100.0% 66.7%
3451175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.82e-01 100.0% 94.5%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 71.0 5.71e-01 100.0% 61.1%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.78 70.0 6.25e-01 100.0% 77.1%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 69.0 6.07e-01 100.0% 70.7%
4118011 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.78 68.0 5.76e-01 100.0% 71.8%
3176702 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.76 66.0 4.74e-01 100.0% 48.4%
3637508 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 68.0 6.26e-01 100.0% 81.5%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.41e-01 100.0% 57.8%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 63.0 5.77e-01 100.0% 81.4%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 64.0 5.40e-01 100.0% 64.7%
4270910 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 61.0 5.62e-01 100.0% 81.4%
4975478 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 61.0 5.23e-01 100.0% 84.7%
3598125 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.39e-01 100.0% 72.0%
4550958 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 52.0 4.08e-01 88.2% 44.2%
4955420 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.64 51.0 3.23e-01 88.2% 17.0%
4478612 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 49.0 3.83e-01 88.2% 40.0%
4153258 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 48.0 3.72e-01 88.2% 37.6%
D3 high residues 172-269
PDB
D4 medium residues 322-415
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02739.23 best 5_3_exonuc_N 56.7 3.40e-15 100.0% 55.5%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3skvA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.63 48.0 3.74e-01 100.0% 37.5%
5ib0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 41.0 3.63e-01 100.0% 45.3%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.57 39.0 3.33e-01 72.3% 47.2%
3nd5A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 33.0 2.91e-01 100.0% 37.5%
6c6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.66e-01 95.7% 72.4%
1o4wA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.54 38.0 3.51e-01 100.0% 56.0%
1gvnD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 48.0 3.43e-01 100.0% 61.5%
2gzsA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.96e-01 79.8% 77.9%
1j1uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 39.0 3.15e-01 80.9% 49.0%
2bdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.85e-01 100.0% 100.0%
2xitA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.70e-01 75.5% 79.7%
4zm6A01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.51 45.0 3.08e-01 100.0% 46.2%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.68e-01 100.0% 80.9%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.50 43.0 3.80e-01 100.0% 64.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4324598 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.94 88.0 6.79e-01 100.0% 49.7%
4995752 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.92 88.0 7.08e-01 100.0% 59.4%
4040391 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.92 88.0 6.87e-01 100.0% 56.1%
4125023 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.92 88.0 7.00e-01 100.0% 55.9%
4299585 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.92 88.0 6.78e-01 100.0% 50.8%
3969358 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.91 85.0 6.92e-01 98.9% 57.5%
4031817 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.91 86.0 6.84e-01 100.0% 54.7%
4238071 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.90 85.0 6.72e-01 100.0% 55.4%
3387660 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.90 84.0 6.69e-01 100.0% 54.7%
3261281 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.89 85.0 6.76e-01 100.0% 56.0%
4029535 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.89 84.0 6.57e-01 100.0% 52.2%
3964138 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.88 82.0 6.46e-01 100.0% 52.2%
3838776 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.88 82.0 6.65e-01 100.0% 58.8%
4322588 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.87 82.0 6.40e-01 98.9% 53.3%
4355422 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 75.0 5.98e-01 100.0% 50.9%
2074443 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.72 66.0 5.33e-01 100.0% 57.5%
4251513 2008.1.1.156 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29906 0.66 45.0 3.71e-01 100.0% 39.4%
3824340 2006.1.4.19 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.63 58.0 4.66e-01 100.0% 81.1%
4387003 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.61 39.0 2.91e-01 100.0% 24.3%
4945871 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 38.0 3.83e-01 100.0% 63.2%
3494073 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.59 52.0 3.21e-01 100.0% 56.9%
3705839 7570.1.1.0 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.59 41.0 3.33e-01 73.4% 57.8%
4431514 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.56 43.0 3.78e-01 80.9% 85.7%
4947959 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 49.0 3.96e-01 100.0% 84.6%
4972398 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 49.0 4.12e-01 100.0% 66.3%
4032348 2004.1.1.347 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_24 0.54 49.0 3.57e-01 100.0% 37.2%
4346434 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.54 40.0 3.57e-01 79.8% 84.1%
4108481 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.53 39.0 3.48e-01 79.8% 84.1%
3989133 2010.1.1.3 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.52 41.0 3.59e-01 100.0% 55.9%
2390393 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.51 44.0 3.50e-01 100.0% 53.1%
3288652 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 45.0 3.79e-01 100.0% 59.4%
4648027 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.50 43.0 3.51e-01 100.0% 75.9%