←Back to structures

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00454

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00454

Identity

Kingdom:
phage

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 145-225
PDB
Domain cluster: rep: OK283618.1__UCR92177.1__LPLM1_00042__00042__D87-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02945.22 best Endonuclease_7 53.2 3.20e-14 90.1% 73.2%
D2 medium residues 79-144
PDB
Domain cluster: rep: IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223635__D1-73
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.79 50.0 5.55e-01 72.7% 79.6%
1pzwA00 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.71 50.0 4.70e-01 74.2% 90.0%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 54.0 4.88e-01 81.8% 95.3%
7po9A01 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.67 48.0 4.39e-01 75.8% 83.7%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.58 52.0 3.96e-01 97.0% 83.1%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 37.0 2.93e-01 74.2% 33.8%
2qg6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.80e-01 80.3% 70.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573660 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 56.0 5.13e-01 83.3% 97.6%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 54.0 4.87e-01 86.4% 95.6%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 50.0 4.52e-01 81.8% 87.8%
5033522 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 4.87e-01 74.2% 96.0%
3990940 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.63 42.0 4.07e-01 71.2% 61.3%
3829033 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 48.0 4.49e-01 83.3% 98.8%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 38.0 4.22e-01 83.3% 86.0%
3360826 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.50e-01 72.7% 100.0%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 43.0 4.41e-01 92.4% 86.2%
4851507 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 38.0 2.93e-01 72.7% 72.4%
1516005 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.53 37.0 2.93e-01 74.2% 33.8%
4985634 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.52 36.0 3.71e-01 72.7% 88.9%
3700533 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.00e-01 100.0% 27.0%