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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00462

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00462

Identity

Kingdom:
phage

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 66.0 6.17e-01 78.4% 72.1%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 66.0 5.03e-01 78.4% 38.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 65.0 5.51e-01 78.4% 50.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 65.0 5.97e-01 78.4% 62.5%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.87 64.0 4.54e-01 78.4% 28.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 65.0 6.00e-01 82.4% 65.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 62.0 5.81e-01 80.4% 65.6%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 65.0 6.43e-01 84.3% 94.4%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 61.0 5.60e-01 78.4% 61.5%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 63.0 6.02e-01 82.4% 79.3%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.82 61.0 4.39e-01 82.4% 29.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 58.0 5.55e-01 78.4% 65.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.23e-01 84.3% 54.0%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 63.0 5.67e-01 84.3% 67.1%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.81 63.0 4.09e-01 84.3% 22.8%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.50e-01 84.3% 65.3%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 5.85e-01 88.2% 71.6%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 53.0 5.40e-01 72.5% 70.6%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 54.0 4.92e-01 70.6% 56.1%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 54.0 4.80e-01 70.6% 53.6%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 61.0 5.35e-01 84.3% 58.7%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 6.06e-01 86.3% 83.9%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 51.0 4.71e-01 70.6% 53.0%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 54.0 4.52e-01 72.5% 44.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.77 65.0 5.07e-01 94.1% 53.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 5.64e-01 86.3% 74.6%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 53.0 4.71e-01 72.5% 52.9%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 55.0 4.74e-01 76.5% 51.9%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.76 55.0 3.80e-01 76.5% 24.2%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 51.0 4.70e-01 70.6% 58.2%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 51.0 4.86e-01 72.5% 60.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 5.25e-01 88.2% 60.0%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 52.0 4.38e-01 72.5% 45.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 5.47e-01 92.2% 66.7%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.75 55.0 4.00e-01 80.4% 60.6%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 53.0 4.76e-01 74.5% 54.3%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 55.0 5.95e-01 80.4% 100.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 58.0 5.26e-01 88.2% 64.3%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 4.98e-01 94.1% 70.3%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 5.06e-01 94.1% 61.4%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 64.0 5.45e-01 98.0% 80.5%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 54.0 3.46e-01 86.3% 16.4%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 50.0 4.42e-01 72.5% 49.3%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.72 51.0 5.44e-01 76.5% 100.0%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 5.77e-01 84.3% 97.7%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 4.98e-01 94.1% 63.6%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 54.0 4.61e-01 84.3% 51.8%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 54.0 4.50e-01 84.3% 45.7%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 49.0 4.06e-01 72.5% 46.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.88e-01 88.2% 63.2%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 48.0 4.51e-01 72.5% 70.3%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 5.29e-01 100.0% 83.6%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 56.0 5.55e-01 94.1% 98.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.12e-01 100.0% 72.6%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.04e-01 82.4% 84.2%
2k9qA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 5.07e-01 72.5% 95.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.68 56.0 4.25e-01 96.1% 41.2%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 4.27e-01 100.0% 44.2%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.61e-01 98.0% 92.7%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 48.0 4.52e-01 78.4% 61.5%
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.61e-01 76.5% 74.1%
4oazA00 1.10.10.1930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 51.0 4.53e-01 84.3% 77.3%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 5.25e-01 100.0% 78.1%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 50.0 3.41e-01 82.4% 74.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 4.93e-01 100.0% 82.6%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.49e-01 96.1% 94.4%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.98e-01 96.1% 92.3%
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 46.0 4.69e-01 86.3% 98.0%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.15e-01 94.1% 71.6%
2cwyA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.53 40.0 3.47e-01 92.2% 97.8%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938253 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.99 75.0 8.49e-01 78.4% 100.0%
5058447 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.95 78.0 7.62e-01 86.3% 83.6%
5030025 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 78.0 7.92e-01 88.2% 90.0%
3603236 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 69.0 7.77e-01 82.4% 100.0%
None 0.91 68.0 5.10e-01 78.4% 36.4%
4388780 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.90 70.0 4.81e-01 80.4% 28.3%
4202221 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.90 67.0 6.02e-01 78.4% 58.8%
4876274 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.90 67.0 6.24e-01 78.4% 64.5%
3284984 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.90 69.0 4.25e-01 80.4% 16.1%
4497189 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.90 67.0 6.09e-01 78.4% 61.5%
3974736 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 67.0 5.51e-01 78.4% 47.1%
4304581 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.89 66.0 5.29e-01 78.4% 42.6%
3288971 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.89 69.0 4.71e-01 80.4% 27.3%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.89 74.0 7.84e-01 90.2% 100.0%
3284461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 69.0 4.22e-01 80.4% 16.4%
4577850 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.89 66.0 5.18e-01 78.4% 40.4%
2817645 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.89 68.0 5.70e-01 80.4% 51.2%
4486973 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 65.0 5.40e-01 78.4% 47.1%
4279016 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.88 65.0 5.52e-01 78.4% 50.0%
3587471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 67.0 4.89e-01 82.4% 33.3%
4340270 101.1.2.5 alpha arrays › HTH › HTH › winged helix domain › Crp 0.88 67.0 7.14e-01 80.4% 97.8%
3961841 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.88 67.0 5.93e-01 82.4% 58.6%
4160122 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.88 67.0 4.63e-01 80.4% 27.3%
4372550 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 65.0 5.27e-01 78.4% 44.4%
3969641 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.87 64.0 5.45e-01 80.4% 50.0%
3587755 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.87 65.0 4.68e-01 78.4% 30.8%
4663875 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.87 66.0 4.14e-01 80.4% 17.1%
4944726 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 66.0 6.22e-01 82.4% 68.3%
4146353 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.87 66.0 5.56e-01 80.4% 51.2%
5027601 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 79.0 7.44e-01 100.0% 90.0%
3587538 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 64.0 5.74e-01 80.4% 58.8%
4032673 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 66.0 4.09e-01 80.4% 16.7%
3589532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 65.0 5.10e-01 82.4% 41.8%
4997411 101.1.3.33 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.85 65.0 5.48e-01 82.4% 51.2%
4175748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 63.0 5.33e-01 78.4% 50.0%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 64.0 5.84e-01 82.4% 63.1%
4165188 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 64.0 5.30e-01 82.4% 48.2%
4237551 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 64.0 5.09e-01 82.4% 43.2%
3281471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 64.0 5.39e-01 82.4% 51.2%
2330636 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 63.0 6.28e-01 80.4% 77.4%
3969325 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 63.0 5.66e-01 82.4% 58.6%
4396640 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 63.0 4.70e-01 82.4% 34.2%
2448404 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 63.0 6.00e-01 80.4% 68.3%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 65.0 6.90e-01 86.3% 95.6%
4947436 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 63.0 6.17e-01 82.4% 74.5%
5067053 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.83 62.0 5.58e-01 82.4% 58.6%
4439853 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 62.0 5.56e-01 82.4% 58.6%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 5.69e-01 94.1% 90.5%
4334910 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.82 62.0 4.55e-01 80.4% 32.8%
149489 101.1.1.95 alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like 0.82 61.0 5.24e-01 82.4% 51.2%
4980028 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.82 64.0 5.48e-01 84.3% 82.5%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 60.0 5.25e-01 80.4% 53.3%
4520564 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 68.0 5.78e-01 90.2% 93.8%
4270967 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.82 61.0 4.70e-01 80.4% 37.3%
4944862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 61.0 5.22e-01 80.4% 51.2%
4534822 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.81 61.0 5.33e-01 82.4% 54.7%
5064701 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.81 60.0 5.18e-01 80.4% 51.2%
5039245 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 6.46e-01 86.3% 88.0%
4093687 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.81 62.0 5.13e-01 84.3% 75.6%
3983411 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.81 61.0 5.38e-01 84.3% 56.0%
4958364 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 5.06e-01 84.3% 54.7%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.80 61.0 5.81e-01 82.4% 71.7%
4342758 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.80 60.0 5.87e-01 80.4% 74.5%
3512259 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.80 62.0 4.87e-01 84.3% 50.5%
3968335 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.80 60.0 5.75e-01 82.4% 70.0%
4934485 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.80 60.0 5.29e-01 82.4% 55.4%
3573627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 4.46e-01 82.4% 34.4%
3943462 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 5.99e-01 84.3% 96.4%
5062514 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.78 62.0 6.54e-01 90.2% 100.0%
4969117 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 54.0 4.26e-01 72.5% 40.0%
3908306 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.78 63.0 5.98e-01 90.2% 81.7%
3736326 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 59.0 5.43e-01 82.4% 66.2%
3941460 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.77 63.0 5.77e-01 88.2% 78.5%
3795916 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 58.0 6.09e-01 82.4% 93.3%
3968864 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 62.0 5.44e-01 88.2% 64.0%
3990848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 64.0 6.26e-01 92.2% 92.7%
4501735 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 5.06e-01 82.4% 56.0%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 57.0 5.62e-01 86.3% 74.5%
3283074 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 61.0 5.11e-01 88.2% 56.5%
3469752 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.74 58.0 6.04e-01 90.2% 100.0%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 64.0 5.41e-01 98.0% 60.0%
3949224 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.72 57.0 5.14e-01 86.3% 64.3%
3942713 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.75e-01 90.2% 100.0%
3979166 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 60.0 5.45e-01 96.1% 74.3%
D2 high residues 63-244
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03161.19 best LAGLIDADG_2 59.2 7.00e-16 87.9% 78.1%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.79 69.0 6.84e-01 90.7% 88.8%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.75 71.0 6.77e-01 100.0% 92.2%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.75 65.0 6.42e-01 98.9% 86.9%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 38.0 4.14e-01 99.5% 63.7%
1wihA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 27.0 3.96e-01 86.3% 83.3%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 26.0 3.93e-01 89.6% 90.5%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 24.0 3.65e-01 87.4% 88.6%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 28.0 3.96e-01 94.5% 100.0%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 22.0 3.25e-01 73.6% 77.8%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 25.0 3.53e-01 89.6% 92.6%
2pa8D01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 26.0 3.57e-01 89.0% 89.8%
4qjvB00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 27.0 3.65e-01 89.0% 90.4%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 26.0 3.39e-01 89.0% 80.2%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 27.0 3.29e-01 89.6% 72.6%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.53 27.0 3.28e-01 89.0% 73.0%
2lxrA00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.53 24.0 3.41e-01 84.6% 96.1%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 28.0 3.49e-01 74.2% 87.3%
5lt5A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.52 29.0 3.79e-01 95.1% 97.1%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 29.0 3.55e-01 78.0% 86.6%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 28.0 3.56e-01 94.0% 91.5%
6ruiK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 26.0 3.32e-01 91.8% 84.5%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 30.0 3.74e-01 86.8% 98.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4200948 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.85 45.0 6.14e-01 96.2% 95.0%
4977674 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.84 80.0 7.43e-01 100.0% 90.0%
4996524 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 76.0 7.39e-01 100.0% 91.8%
4978265 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 39.0 4.15e-01 88.5% 53.1%
4979525 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 76.0 7.47e-01 100.0% 93.8%
3251044 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.80 60.0 6.56e-01 76.9% 98.1%
5065094 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 42.0 5.05e-01 100.0% 80.0%
5072185 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 39.0 5.36e-01 72.5% 97.9%
5029541 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 35.0 4.88e-01 97.3% 90.0%
3948181 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.70 30.0 4.73e-01 89.0% 100.0%
2834531 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 34.0 4.53e-01 99.5% 95.0%
4981202 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.63 24.0 3.69e-01 85.2% 84.0%
3315331 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.62 29.0 4.24e-01 89.6% 100.0%
4993854 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 34.0 4.55e-01 97.8% 100.0%
3357746 304.12.1.8 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › bHLH-TF_ACT-like_plant 0.60 26.0 3.87e-01 85.2% 100.0%
3317095 304.9.1.122 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › bHLH-TF_ACT-like_plant 0.60 26.0 3.87e-01 84.6% 100.0%
4273759 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.59 28.0 3.69e-01 90.1% 79.8%
3298082 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 29.0 3.81e-01 89.6% 88.2%
3671608 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 29.0 3.64e-01 91.2% 76.4%
3456962 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 29.0 3.96e-01 91.2% 98.8%
3253387 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.57 27.0 3.58e-01 81.3% 82.1%
3817811 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 28.0 3.94e-01 92.9% 98.8%
3675774 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.57 29.0 3.94e-01 91.8% 100.0%
4616161 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.57 31.0 3.88e-01 93.4% 88.6%
3367922 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.56 29.0 3.86e-01 92.9% 93.7%
3462522 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 35.0 4.03e-01 78.0% 87.2%
3367441 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 30.0 3.87e-01 94.5% 93.9%
3824912 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 27.0 3.71e-01 91.2% 98.8%
3468140 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 27.0 3.64e-01 94.0% 92.2%
5041345 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 26.0 3.74e-01 94.0% 100.0%
3451456 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.54 30.0 3.85e-01 92.9% 98.9%
3341034 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.54 31.0 3.82e-01 87.9% 90.9%
3667551 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 27.0 3.63e-01 89.0% 93.3%
5042725 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.54 26.0 3.56e-01 89.0% 90.0%
3252217 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.54 27.0 3.34e-01 89.6% 73.9%
5046913 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 30.0 3.92e-01 95.6% 100.0%
3822351 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.52 28.0 3.64e-01 94.0% 95.8%
4195003 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.52 25.0 3.40e-01 88.5% 88.9%
4928630 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.51 25.0 3.32e-01 91.2% 90.0%
3345132 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.51 28.0 3.43e-01 89.6% 83.5%
5052337 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.50 35.0 3.97e-01 72.5% 92.9%
4951755 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.50 25.0 3.35e-01 91.8% 95.3%
D3 high residues 357-397_444-633
PDB