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P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00482

Bact-Vir

P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00482

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-144
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 57.0 6.20e-01 96.5% 98.6%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 60.0 6.34e-01 91.9% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 56.0 5.57e-01 95.3% 76.7%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.74 66.0 6.40e-01 98.8% 88.7%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 64.0 6.46e-01 97.7% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 59.0 6.17e-01 91.9% 100.0%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.69 61.0 4.78e-01 96.5% 61.7%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 59.0 5.86e-01 95.3% 97.8%
1rcqA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.69 60.0 5.00e-01 96.5% 70.0%
3kw3B01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.68 59.0 4.98e-01 96.5% 70.1%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 59.0 5.79e-01 94.2% 95.6%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 57.0 5.49e-01 93.0% 99.0%
5yycA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.67 58.0 5.02e-01 96.5% 74.1%
2dy3D01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.67 58.0 5.18e-01 96.5% 77.2%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 58.0 5.71e-01 97.7% 90.2%
3anuA01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.66 57.0 4.81e-01 95.3% 65.3%
4eclA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.66 58.0 4.84e-01 98.8% 72.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 54.0 5.30e-01 91.9% 98.9%
1d1nA00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 57.0 5.51e-01 100.0% 92.9%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 54.0 5.18e-01 97.7% 100.0%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.64 54.0 5.41e-01 94.2% 100.0%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.63 54.0 4.60e-01 96.5% 59.7%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 52.0 4.38e-01 98.8% 83.4%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 51.0 4.38e-01 98.8% 91.0%
3vgfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 34.0 3.81e-01 89.5% 79.0%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 34.0 3.57e-01 100.0% 62.8%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 4.32e-01 95.3% 78.5%
3obaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 3.68e-01 100.0% 85.8%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.53 43.0 2.77e-01 100.0% 16.0%
1x5zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.89e-01 100.0% 74.3%
3iupA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 40.0 3.23e-01 88.4% 87.8%
2q7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.65e-01 88.4% 76.5%
7t7zA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 43.0 3.72e-01 100.0% 62.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.81 71.0 7.32e-01 100.0% 100.0%
3488003 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.77 68.0 6.92e-01 95.3% 100.0%
3597282 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 65.0 6.73e-01 98.8% 100.0%
4028468 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.75 69.0 6.41e-01 100.0% 100.0%
3944437 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 65.0 6.70e-01 100.0% 100.0%
1030933 1.1.7.29 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel 0.73 66.0 6.52e-01 98.8% 100.0%
3287262 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.73 63.0 5.92e-01 95.3% 91.4%
3202063 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.73 64.0 5.55e-01 96.5% 99.2%
2556060 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 6.28e-01 95.3% 100.0%
3689402 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.73 61.0 5.73e-01 91.9% 99.0%
3680769 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 63.0 5.45e-01 94.2% 90.8%
3596642 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 62.0 6.27e-01 96.5% 95.3%
2389026 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.72 63.0 6.05e-01 96.5% 99.0%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.72 63.0 6.00e-01 96.5% 90.0%
3617006 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 63.0 5.78e-01 96.5% 85.5%
4984467 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.71 62.0 6.03e-01 96.5% 96.8%
4946423 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.71 62.0 5.96e-01 97.7% 96.0%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 57.0 6.05e-01 93.0% 100.0%
4660673 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 62.0 6.25e-01 98.8% 97.6%
3630866 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.70 62.0 5.45e-01 98.8% 97.7%
4978554 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.87e-01 97.7% 96.0%
4510320 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.70 59.0 5.87e-01 93.0% 97.8%
3908752 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.70 58.0 5.15e-01 91.9% 100.0%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.70 62.0 3.90e-01 100.0% 78.3%
4854964 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 59.0 5.99e-01 95.3% 94.2%
3183224 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.69 61.0 5.85e-01 98.8% 99.0%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 57.0 5.77e-01 94.2% 90.7%
4173804 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 58.0 5.76e-01 91.9% 98.9%
3998042 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 60.0 5.68e-01 97.7% 95.2%
3690064 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.69 61.0 5.32e-01 98.8% 97.7%
3268887 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 60.0 5.70e-01 95.3% 91.0%
4012191 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.72e-01 95.3% 95.8%
4943639 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 59.0 5.97e-01 97.7% 98.8%
3927951 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 60.0 5.69e-01 100.0% 100.0%
4548402 1.1.7.6 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C 0.68 59.0 5.10e-01 96.5% 75.9%
1918525 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 58.0 5.52e-01 95.3% 97.0%
3740846 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.67 59.0 5.36e-01 97.7% 100.0%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 56.0 5.22e-01 98.8% 71.8%
3547278 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.67 59.0 5.57e-01 98.8% 99.0%
3583656 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 57.0 5.15e-01 95.3% 85.8%
3947980 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 52.0 4.95e-01 83.7% 80.0%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.66 59.0 3.73e-01 100.0% 20.2%
4429352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.79e-01 98.8% 94.4%
4066771 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 56.0 5.42e-01 96.5% 95.8%
4976800 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.65 54.0 5.38e-01 93.0% 88.9%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 5.15e-01 91.9% 90.5%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 40.0 3.84e-01 100.0% 57.0%
3705413 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 52.0 5.07e-01 96.5% 98.9%
4452870 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 51.0 5.05e-01 95.3% 96.7%
2814163 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 48.0 3.66e-01 95.3% 34.5%
3251949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.46e-01 84.9% 82.4%
3520927 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 46.0 3.49e-01 95.3% 35.5%
3868249 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 47.0 4.28e-01 94.2% 70.4%
4498731 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.68e-01 97.7% 55.0%
5038791 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.52 43.0 3.80e-01 98.8% 97.9%
4530320 11.1.5.89 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.51 44.0 3.81e-01 96.5% 68.6%
3264433 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.51 40.0 3.70e-01 87.2% 78.3%
4934607 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.50 39.0 3.25e-01 95.3% 44.8%
D2 high residues 162-250
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 52.0 5.27e-01 86.5% 74.7%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.71 49.0 5.25e-01 85.4% 84.0%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.67 39.0 4.46e-01 70.8% 81.0%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 49.0 4.84e-01 88.8% 75.0%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 50.0 5.04e-01 88.8% 80.0%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.65 47.0 4.70e-01 84.3% 72.3%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 45.0 3.69e-01 74.2% 66.5%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.63 45.0 4.62e-01 87.6% 78.2%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.63 43.0 4.52e-01 83.1% 78.8%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 45.0 3.82e-01 75.3% 69.1%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 47.0 4.97e-01 82.0% 92.2%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 44.0 3.67e-01 75.3% 68.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.62 39.0 4.18e-01 74.2% 74.0%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 51.0 5.02e-01 91.0% 83.5%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.49e-01 75.3% 59.7%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.48e-01 100.0% 78.2%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.60 47.0 4.82e-01 100.0% 91.5%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.60 46.0 4.62e-01 85.4% 82.0%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 42.0 3.84e-01 75.3% 81.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 41.0 3.76e-01 75.3% 59.8%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.97e-01 85.4% 85.7%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 44.0 3.86e-01 87.6% 59.9%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.10e-01 96.6% 75.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.18e-01 100.0% 79.2%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 38.0 3.59e-01 75.3% 60.6%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 34.0 3.29e-01 71.9% 58.2%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 3.93e-01 100.0% 75.0%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 4.10e-01 94.4% 93.6%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 3.89e-01 100.0% 77.5%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 3.82e-01 100.0% 73.3%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 45.0 4.24e-01 97.8% 97.3%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 46.0 3.66e-01 100.0% 65.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.74e-01 100.0% 73.5%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.78e-01 100.0% 80.6%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 46.0 3.87e-01 100.0% 74.5%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.55e-01 100.0% 63.5%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.80e-01 100.0% 81.4%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.79e-01 100.0% 76.3%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.82e-01 100.0% 80.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.61e-01 100.0% 66.3%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 45.0 3.72e-01 100.0% 80.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4210849 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.74 63.0 6.50e-01 97.8% 97.6%
4469793 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.72 56.0 6.04e-01 92.1% 98.7%
4933363 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.72 48.0 5.24e-01 85.4% 82.4%
None 0.71 48.0 3.23e-01 85.4% 18.2%
4991129 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 50.0 5.15e-01 87.6% 77.4%
5010595 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 51.0 5.23e-01 86.5% 78.8%
4945432 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 49.0 5.05e-01 85.4% 76.5%
3786245 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.70 59.0 6.14e-01 97.8% 100.0%
4259810 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 50.0 5.26e-01 85.4% 83.7%
4263415 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 49.0 4.96e-01 87.6% 74.4%
5077063 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 47.0 5.04e-01 85.4% 84.0%
4926946 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 49.0 5.01e-01 85.4% 78.8%
4969578 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 46.0 4.97e-01 83.1% 83.8%
4964309 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 47.0 5.03e-01 83.1% 85.1%
5038467 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 48.0 5.10e-01 83.1% 84.8%
5074238 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 47.0 5.00e-01 84.3% 85.3%
5035997 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 43.0 4.79e-01 88.8% 84.3%
3187444 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 54.0 4.97e-01 87.6% 85.2%
5041607 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 45.0 4.85e-01 86.5% 83.8%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.67 42.0 4.20e-01 74.2% 62.2%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 53.0 5.01e-01 87.6% 79.1%
5041618 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.66 50.0 4.98e-01 86.5% 76.6%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.66 40.0 4.89e-01 73.0% 98.2%
3710481 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.66 49.0 4.94e-01 87.6% 77.8%
5075927 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 57.0 5.81e-01 96.6% 100.0%
4987864 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.66 46.0 4.91e-01 83.1% 86.7%
3171334 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.65 51.0 4.79e-01 85.4% 84.5%
4957888 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.65 42.0 4.92e-01 75.3% 96.7%
5040595 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.65 47.0 3.86e-01 75.3% 70.0%
3566270 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.65 56.0 5.64e-01 96.6% 97.8%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 52.0 5.08e-01 88.8% 84.0%
2869319 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 48.0 4.70e-01 87.6% 72.4%
5059785 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 45.0 4.72e-01 82.0% 81.2%
4051617 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 48.0 4.25e-01 86.5% 56.0%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 57.0 5.20e-01 97.8% 94.8%
5002426 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 48.0 4.92e-01 83.1% 83.5%
3483841 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 50.0 4.81e-01 88.8% 73.8%
3224730 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 51.0 4.73e-01 86.5% 75.5%
5043252 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 45.0 3.66e-01 75.3% 61.7%
4981490 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 45.0 3.65e-01 75.3% 61.7%
5044156 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 45.0 3.75e-01 75.3% 70.0%
3714390 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.63 51.0 4.62e-01 89.9% 94.4%
4074297 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.63 46.0 4.24e-01 84.3% 60.0%
3590326 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.63 52.0 4.93e-01 89.9% 77.1%
4311355 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.63 52.0 5.01e-01 89.9% 85.0%
4496885 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 44.0 3.53e-01 75.3% 59.5%
3407712 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 54.0 5.25e-01 97.8% 88.8%
4132799 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 45.0 3.72e-01 75.3% 70.0%
3800913 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.62 47.0 4.08e-01 86.5% 52.6%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 48.0 4.88e-01 84.3% 83.3%
5051353 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 44.0 3.54e-01 75.3% 62.2%
4948135 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 44.0 3.48e-01 75.3% 59.5%
5000784 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.61 50.0 4.81e-01 87.6% 83.0%
4978636 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.61 44.0 3.50e-01 75.3% 60.9%
3813200 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 47.0 4.34e-01 86.5% 66.7%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.21e-01 74.2% 80.0%
5048051 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.59 47.0 4.72e-01 85.4% 86.5%
3583597 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.87e-01 75.3% 65.6%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.58 47.0 4.19e-01 89.9% 64.7%
4469533 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 44.0 3.14e-01 84.3% 37.7%
3251647 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.30e-01 100.0% 83.3%
1840969 11.1.1.256 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.55 42.0 4.24e-01 96.6% 83.5%
3279401 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 47.0 3.86e-01 100.0% 71.5%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.31e-01 97.8% 89.5%
4489896 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 46.0 3.70e-01 100.0% 70.6%
4072320 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.80e-01 100.0% 81.2%
4505054 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.76e-01 100.0% 75.2%
3272164 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 40.0 4.00e-01 98.9% 82.1%
5033350 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 45.0 3.66e-01 100.0% 68.5%
3222982 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 40.0 3.45e-01 86.5% 98.7%
4233298 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 45.0 3.71e-01 100.0% 74.1%
4600482 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 44.0 3.68e-01 98.9% 71.5%
3744150 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 45.0 3.60e-01 100.0% 67.9%
70 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 45.0 3.61e-01 100.0% 66.3%
3390626 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 36.0 3.92e-01 80.9% 98.6%
4986653 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 44.0 3.59e-01 100.0% 72.1%
3600682 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 42.0 3.96e-01 96.6% 99.1%
D3 medium residues 13-47_264-344_362-410
PDB
Domain cluster: representative
D4 medium residues 345-361_411-561
PDB
Domain cluster: representative