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P0
Euk-VirSuakwa_aphid-borne_yellows_virus
P0__YP_006666505__Suakwa_aphid-borne_yellows_virus__646010
Identity
- Accession:
- YP_006666505 ↗
- Protein ID:
- P0
- Kingdom:
- euk
Quality
66.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Sobelivirales›
Solemoviridae›
Polerovirus›
Suakwa_aphid-borne_yellows_virus
TaxID: 646010
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-78_98-121
Domain cluster:
rep: P0__YP_010087202__Pumpkin_polerovirus__2518373__D1-79
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mmlF01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 33.0 | 3.66e-01 | 97.1% | 68.4% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.58 | 39.0 | 3.58e-01 | 74.5% | 52.2% |
| 3if4A01 | 2.20.20.40 | Mainly Beta › Single Sheet › Anthopleurin-A › Integron cassette protein | 0.57 | 27.0 | 3.69e-01 | 96.1% | 92.0% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.54 | 40.0 | 3.21e-01 | 82.4% | 38.1% |
| 2pc1A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 41.0 | 3.47e-01 | 84.3% | 90.8% |
| 3zc4A01 | 1.20.120.1610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 37.0 | 3.89e-01 | 83.3% | 83.3% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 40.0 | 4.24e-01 | 89.2% | 98.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3802156 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 51.0 | 3.35e-01 | 100.0% | 66.7% |
| 4053140 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.58 | 50.0 | 3.92e-01 | 95.1% | 93.2% |
| 3986618 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.56 | 29.0 | 3.62e-01 | 88.2% | 83.3% |
| 3962296 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.55 | 46.0 | 3.62e-01 | 95.1% | 88.3% |
| 3962624 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.50 | 40.0 | 3.29e-01 | 83.3% | 57.1% |
D2
medium
residues 79-97_122-174
D3
medium
residues 175-269