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P0

Euk-Vir

Strawberry_polerovirus_1

P0__YP_009100302__Strawberry_polerovirus_1__1564903

Identity

Accession:
YP_009100302 ↗
Protein ID:
P0
Kingdom:
euk

Quality

56.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-73
PDB
D2 medium residues 74-135
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.76 53.0 4.53e-01 74.2% 69.0%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.74 52.0 4.81e-01 72.6% 71.4%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.73 52.0 4.48e-01 74.2% 59.4%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.73 50.0 3.98e-01 71.0% 92.6%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.71 50.0 4.28e-01 74.2% 58.6%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.70 48.0 4.42e-01 72.6% 67.5%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.69 51.0 4.22e-01 79.0% 59.5%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 52.0 4.68e-01 88.7% 100.0%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.66 47.0 3.68e-01 77.4% 45.0%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 46.0 3.73e-01 75.8% 37.3%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.65 46.0 4.19e-01 75.8% 75.9%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.65 46.0 4.43e-01 77.4% 69.3%
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 4.40e-01 83.9% 97.8%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.65 46.0 3.89e-01 75.8% 49.1%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.64 44.0 4.37e-01 72.6% 97.0%
2zfzD00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.64 45.0 4.25e-01 75.8% 63.3%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.64 45.0 3.33e-01 75.8% 64.8%
1b4bA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 45.0 4.33e-01 75.8% 70.4%
1vefA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 44.0 3.45e-01 75.8% 32.4%
6jy1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 43.0 3.49e-01 74.2% 36.1%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 45.0 3.39e-01 79.0% 47.5%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 42.0 4.13e-01 72.6% 95.7%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 43.0 4.14e-01 75.8% 71.2%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.61 43.0 3.58e-01 75.8% 86.0%
1a99A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 40.0 3.01e-01 71.0% 69.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 44.0 3.28e-01 82.3% 98.2%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 41.0 3.18e-01 77.4% 30.7%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.56 40.0 3.80e-01 77.4% 64.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 39.0 3.48e-01 74.2% 59.6%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 49.0 3.24e-01 100.0% 42.2%
2kfpA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 41.0 3.26e-01 79.0% 55.2%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 38.0 3.05e-01 74.2% 55.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.60e-01 80.6% 89.1%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.52e-01 77.4% 71.1%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.54 43.0 3.61e-01 91.9% 88.1%
2x24A02 2.40.460.10 Mainly Beta › Beta Barrel › ClpP/crotonase fold › Biotin dependent carboxylase carboxyltransferase 0.52 36.0 3.57e-01 74.2% 78.8%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.52 38.0 2.51e-01 79.0% 61.5%
2ehpA00 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.52 41.0 3.42e-01 91.9% 99.2%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.42e-01 71.0% 77.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082092 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.83 58.0 3.91e-01 77.4% 20.9%
4986620 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.79 55.0 3.69e-01 79.0% 20.9%
5056573 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.75 56.0 3.76e-01 79.0% 21.8%
5022354 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 53.0 4.96e-01 75.8% 73.3%
4309233 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.73 52.0 4.90e-01 75.8% 62.7%
1114523 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.73 52.0 4.65e-01 75.8% 54.7%
3258830 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.70 49.0 4.40e-01 75.8% 53.3%
4338727 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.70 50.0 4.70e-01 75.8% 65.3%
4940092 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.69 50.0 4.57e-01 75.8% 73.8%
3781863 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.69 50.0 3.12e-01 75.8% 16.4%
4095530 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.69 49.0 4.31e-01 75.8% 56.8%
3284037 3016.1.1.19 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.69 50.0 4.73e-01 77.4% 69.3%
5075951 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.69 49.0 4.53e-01 75.8% 60.0%
4990495 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.68 47.0 4.68e-01 74.2% 69.2%
3743247 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.68 47.0 2.96e-01 74.2% 14.5%
4061807 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.67 47.0 4.67e-01 74.2% 70.8%
4526772 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.67 48.0 4.63e-01 75.8% 68.6%
4263340 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.67 47.0 4.26e-01 74.2% 55.3%
4058430 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 46.0 4.55e-01 74.2% 69.2%
3587507 2006.1.1.37 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.66 48.0 3.12e-01 77.4% 38.0%
3176794 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.66 47.0 3.68e-01 75.8% 40.7%
3963144 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.66 47.0 4.55e-01 75.8% 68.6%
3280548 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.66 47.0 4.36e-01 75.8% 65.0%
4012599 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 46.0 4.09e-01 75.8% 51.6%
5023531 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 47.0 4.31e-01 75.8% 75.0%
4563340 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 46.0 4.52e-01 75.8% 67.1%
4269197 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 46.0 4.29e-01 75.8% 60.0%
1678131 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.65 46.0 4.14e-01 75.8% 52.2%
5057765 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.65 47.0 4.34e-01 77.4% 71.2%
3271803 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 45.0 3.83e-01 75.8% 52.4%
5080331 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 45.0 3.83e-01 75.8% 69.5%
3286512 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 44.0 4.09e-01 75.8% 55.3%
4955639 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.63 44.0 4.37e-01 75.8% 70.8%
4182465 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.63 43.0 3.89e-01 71.0% 83.5%
4174479 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.63 44.0 3.69e-01 75.8% 66.1%
3991740 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 43.0 2.81e-01 74.2% 15.2%
4968061 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 44.0 3.98e-01 75.8% 54.4%
4580140 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 44.0 4.00e-01 74.2% 57.6%
4976232 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.63 44.0 3.96e-01 75.8% 57.8%
4990132 309.1.1.15 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › DEAD_assoc 0.62 54.0 3.87e-01 100.0% 73.3%
1016844 306.2.1.1 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.62 44.0 4.10e-01 75.8% 63.7%
2709980 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.62 43.0 3.91e-01 75.8% 53.3%
4932736 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.60 43.0 4.06e-01 75.8% 72.0%
4336912 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 42.0 3.57e-01 74.2% 66.7%
3225952 304.5.1.23 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.60 42.0 3.69e-01 74.2% 92.6%
4948690 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 43.0 2.75e-01 79.0% 16.9%
4440640 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.59 41.0 3.73e-01 72.6% 83.5%
2594999 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.59 41.0 3.69e-01 72.6% 81.6%
4467662 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 42.0 4.06e-01 75.8% 70.0%
4935117 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 39.0 3.93e-01 71.0% 66.2%
4324737 306.1.1.0 a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB 0.59 41.0 3.95e-01 75.8% 66.7%
4117010 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 41.0 3.48e-01 75.8% 65.5%
5055289 309.1.1.15 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › DEAD_assoc 0.58 49.0 3.56e-01 100.0% 73.7%
5002287 306.3.1.6 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc 0.57 49.0 4.01e-01 100.0% 70.8%
4957290 306.2.1.3 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › DEAD_assoc 0.57 50.0 4.10e-01 100.0% 73.0%
5579 306.8.1.1 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.56 39.0 3.48e-01 74.2% 59.6%
4927941 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 46.0 3.02e-01 100.0% 28.2%
4669938 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 38.0 3.26e-01 75.8% 63.6%
4107978 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 37.0 3.12e-01 77.4% 66.4%
4456406 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 36.0 3.20e-01 74.2% 56.8%
4993543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.23e-01 72.6% 62.4%
3713916 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.18e-01 77.4% 93.0%
4948233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.09e-01 72.6% 55.8%
5079818 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.06e-01 71.0% 57.8%
D3 medium residues 136-198
PDB
D4 medium residues 199-254
PDB