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P0

Euk-Vir

Pepo_aphid-borne_yellows_virus

P0__YP_009254737__Pepo_aphid-borne_yellows_virus__1462681

Identity

Accession:
YP_009254737 ↗
Protein ID:
P0
Kingdom:
euk

Quality

72.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Pepo_aphid-borne_yellows_virus

TaxID: 1462681

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-116_176-230
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04662.19 best Luteo_PO 29.7 6.90e-07 61.8% 43.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 24.0 3.83e-01 98.2% 89.4%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 25.0 3.56e-01 81.2% 81.2%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 21.0 3.46e-01 97.6% 89.4%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.56 21.0 3.25e-01 95.3% 83.1%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 21.0 3.14e-01 95.9% 79.7%
7cj3A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 41.0 3.57e-01 82.9% 97.7%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 33.0 3.69e-01 93.5% 82.4%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 37.0 3.17e-01 74.7% 78.2%
2uvaG12 3.30.70.3330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 29.0 3.28e-01 97.6% 72.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838183 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.70 23.0 4.23e-01 90.6% 96.4%
5028016 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 25.0 4.02e-01 98.2% 88.6%
5047509 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.64 25.0 3.14e-01 98.2% 57.1%
5029009 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.64 23.0 3.70e-01 95.3% 86.2%
5301 304.24.1.2 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 0.63 24.0 3.80e-01 98.2% 88.1%
5030922 304.24.1.37 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.63 24.0 3.84e-01 95.9% 90.8%
4948262 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.63 25.0 3.68e-01 98.2% 81.3%
4943447 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 24.0 3.62e-01 95.9% 80.0%
3969035 304.24.1.2 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 0.63 24.0 3.74e-01 97.1% 85.7%
5082825 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 26.0 3.17e-01 72.4% 58.2%
4951601 304.24.1.37 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.62 22.0 3.63e-01 95.3% 86.2%
4938102 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 24.0 3.70e-01 98.2% 85.7%
4932631 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.62 25.0 3.26e-01 72.4% 62.1%
4191626 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.62 25.0 3.59e-01 71.8% 77.5%
3387879 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 24.0 3.89e-01 72.4% 93.8%
3324584 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.62 24.0 3.49e-01 97.1% 76.2%
4107133 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 24.0 3.58e-01 98.2% 81.3%
4427431 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 24.0 3.54e-01 98.2% 81.3%
1231422 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.60 25.0 3.11e-01 72.4% 59.3%
3750735 601.1.2.15 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Frag1 0.56 29.0 3.74e-01 85.9% 84.0%
3428375 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 29.0 3.37e-01 100.0% 72.2%
3282905 4085.2.1.1 ↗ alpha arrays › RbcX-like › uncharacterized protein LPG2149 › uncharacterized protein LPG2149 › Helicase_C_3 0.54 22.0 2.98e-01 74.1% 70.6%
4363314 101.1.2.485 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.50 31.0 3.58e-01 94.1% 87.8%
D2 high residues 120-170
PDB