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P0

Euk-Vir

African_eggplant_yellowing_virus

P0__YP_009351864__African_eggplant_yellowing_virus__1963256

Identity

Accession:
YP_009351864 ↗
Protein ID:
P0
Kingdom:
euk

Quality

71.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› African_eggplant_yellowing_virus

TaxID: 1963256

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91_169-230
PDB
Domain cluster: rep: P0__YP_009254737__Pepo_aphid-borne_yellows_virus__1462681__D2-116_176-230
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04662.19 best Luteo_PO 30.3 4.80e-07 55.9% 39.9%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.63 44.0 4.61e-01 77.6% 77.7%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.62 34.0 4.25e-01 86.2% 87.8%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 37.0 4.44e-01 88.2% 94.1%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 39.0 4.47e-01 88.2% 95.4%
2ipcA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.55 41.0 3.49e-01 75.7% 72.7%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 28.0 3.50e-01 75.7% 82.8%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 37.0 4.04e-01 86.2% 84.4%
4gc0A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 39.0 3.46e-01 77.0% 72.6%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 3.86e-01 100.0% 75.9%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 38.0 3.83e-01 99.3% 76.3%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.50 40.0 4.13e-01 84.9% 92.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1145722 601.4.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain 0.59 31.0 3.15e-01 77.6% 49.3%
4956583 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.58 32.0 4.00e-01 86.2% 87.2%
3724773 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.58 41.0 3.21e-01 73.0% 71.6%
3186203 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 40.0 3.24e-01 75.7% 66.5%
4025084 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 42.0 3.42e-01 88.8% 79.7%
3815922 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.51 39.0 3.14e-01 80.3% 72.6%
3211056 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 34.0 3.28e-01 80.3% 60.0%
4947531 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 41.0 3.36e-01 88.2% 85.5%
D2 medium residues 113-164
PDB