P0

Euk-Vir

Pepper_vein_yellows_virus_5

P0__YP_009455739__Pepper_vein_yellows_virus_5__1965355

Identity

76.3 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Pepper_vein_yellows_virus_5

TaxID: 1965355

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-112_215-230

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z3iX03	1.20.120.850	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain	0.56	36.0	3.56e-01	86.7%	59.6%
1ldjA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.56	41.0	3.70e-01	77.8%	97.6%
1jvaB02	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.54	39.0	3.64e-01	75.6%	66.4%
6hwjA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.53	38.0	2.86e-01	76.7%	75.8%
2jynA01	1.10.3560.10	Mainly Alpha › Orthogonal Bundle › yst0336 like fold › yst0336 like domain	0.52	37.0	3.34e-01	76.7%	61.8%
2kjgA00	1.20.120.970	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.51	36.0	3.59e-01	75.6%	77.8%
1at9A00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	38.0	2.94e-01	82.2%	84.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3931637	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.51	39.0	4.19e-01	86.7%	97.3%

D2 medium residues 115-163

PDB

Domain cluster: rep: putative_P0_protein__YP_004207915__Pepper_vein_yellows_virus__909827__D115-165

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04662.19 best	Luteo_PO	35.6	1.10e-08	98.0%	20.2%