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P1-P2
Euk-VirLuffa_aphid-borne_yellows_virus
P1-P2__YP_009162333__Luffa_aphid-borne_yellows_virus__1462682
Identity
- Accession:
- YP_009162333 ↗
- Protein ID:
- P1-P2
- Kingdom:
- euk
Quality
72.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Sobelivirales›
Solemoviridae›
Polerovirus›
Luffa_aphid-borne_yellows_virus
TaxID: 1462682
Cluster
View cluster (38 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 133-202
D2
medium
residues 203-223_311-435
Domain cluster:
rep: P1-P2_fusion_protein__YP_009254738__Pepo_aphid-borne_yellows_virus__1462681__D328-414
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02122.22 best | Peptidase_S39 | 111.1 | 7.60e-32 | 67.8% | 50.2% |
D3
medium
residues 224-310
Domain cluster:
rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02122.22 best | Peptidase_S39 | 84.6 | 9.80e-24 | 100.0% | 42.4% |
D4
medium
residues 581-620_642-677
D5
medium
residues 678-784_900-918
Domain cluster:
rep: P1-P2_fusion_protein__YP_009246451__Barley_virus_G__1825924__D544-567_619-636_670-752
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 37.3 | 2.30e-09 | 92.1% | 24.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 29.0 | 3.50e-01 | 79.4% | 75.6% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.56 | 32.0 | 3.61e-01 | 85.7% | 73.2% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.90e-01 | 79.4% | 82.6% |
| 2jmsA01 | 1.20.50.40 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.52 | 18.0 | 2.68e-01 | 80.2% | 66.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3200443 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 44.0 | 2.89e-01 | 83.3% | 54.8% |
| 4995712 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.55 | 35.0 | 3.99e-01 | 82.5% | 85.3% |
D6
medium
residues 785-841_880-899_919-951
Domain cluster:
rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 61.6 | 9.90e-17 | 54.5% | 13.8% |
| PF02123.22 | RdRP_4 | 27.7 | 1.80e-06 | 34.5% | 7.3% |
D7
medium
residues 1021-1074