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P1-P2

Euk-Vir

African_eggplant_yellowing_virus

P1-P2__YP_009351865__African_eggplant_yellowing_virus__1963256

Identity

Accession:: YP_009351865 ↗
Protein ID:: P1-P2
Kingdom:: euk

Quality

73.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› African_eggplant_yellowing_virus

TaxID: 1963256

Cluster

View cluster (38 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 217-268_320-431

PDB

Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02122.22 best	Peptidase_S39	103.5	1.70e-29	62.2%	47.8%
PF02122.22	Peptidase_S39	52.8	5.40e-14	29.9%	22.2%

D2 high residues 1043-1096

PDB

Domain cluster: rep: putative_protein_P2__YP_001931931__Tobacco_vein_distorting_virus__192203__D1031-1055_1057-1076_1079-1084

D3 medium residues 104-195

PDB

D4 medium residues 269-319

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02122.22 best	Peptidase_S39	49.4	5.90e-13	100.0%	24.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bh8B01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.61	36.0	3.57e-01	82.4%	50.9%
7kfuC02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.52	36.0	2.46e-01	78.4%	42.5%
6ui4A01	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.51	36.0	3.12e-01	76.5%	47.7%
1howA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.51	36.0	2.39e-01	76.5%	68.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4983135	304.57.1.1 ↗	a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14	0.57	41.0	3.52e-01	78.4%	91.8%
5012881	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.53	35.0	3.25e-01	70.6%	74.3%
5064417	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.52	36.0	3.43e-01	72.5%	76.7%
5067500	7577.1.1.5 ↗	a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › SHMT	0.51	39.0	2.56e-01	98.0%	58.5%

D5 medium residues 597-615_722-846

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337098__Changjiang_polero-like_virus_1__1922799__D1-82_112-138

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	88.3	7.90e-25	98.6%	30.1%

D6 medium residues 616-693

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009315896__White_clover_mottle_virus__1913024__D675-719_740-771

D7 medium residues 847-912_966-1041

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	72.7	4.20e-20	53.5%	21.1%
PF02123.22	RdRP_4	40.2	3.00e-10	47.9%	15.7%