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P1-P2_fusion
Euk-VirMaize_yellow_dwarf_virus_RMV
P1-P2_fusion__YP_008083739__Maize_yellow_dwarf_virus_RMV__2170101
Identity
- Accession:
- YP_008083739 ↗
- Protein ID:
- P1-P2_fusion
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Sobelivirales›
Solemoviridae›
Polerovirus›
Maize_yellow_dwarf_virus_RMV
TaxID: 2170101
Cluster
View cluster (38 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 216-236_328-448
D2
medium
residues 237-327
Domain cluster:
rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02122.22 best | Peptidase_S39 | 83.2 | 2.70e-23 | 100.0% | 41.9% |
D3
medium
residues 546-641_744-778
Domain cluster:
rep: replicase_polyprotein__YP_009465710__Pepper_enamovirus__2073163__D698-776_892-917
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 29.2 | 6.50e-07 | 28.2% | 9.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 28.0 | 2.58e-01 | 71.8% | 35.5% |
ECOD (2)
D4
medium
residues 642-743_779-811_854-922
Domain cluster:
rep: RNA-dependent_RNA-polymerase_-RdRp-__YP_004429254__Grapevine_Bulgarian_latent_virus__748667__D66-229_264-320
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 59.9 | 3.10e-16 | 35.3% | 19.1% |
| PF02123.22 | RdRP_4 | 26.2 | 5.30e-06 | 24.0% | 8.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 21.0 | 3.44e-01 | 86.3% | 93.1% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.55 | 26.0 | 3.35e-01 | 71.6% | 76.8% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 23.0 | 3.33e-01 | 77.5% | 87.6% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 24.0 | 3.50e-01 | 80.4% | 98.9% |
| 1a75A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 28.0 | 3.60e-01 | 94.1% | 100.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4875416 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.73 | 70.0 | 5.47e-01 | 100.0% | 57.1% |
| 217141 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.71 | 68.0 | 5.51e-01 | 100.0% | 63.9% |
| 5366 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.71 | 67.0 | 5.26e-01 | 100.0% | 58.8% |
| 3655168 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 56.0 | 4.48e-01 | 100.0% | 58.0% |
D5
medium
residues 987-1042