P1-P2_polyprotein

Euk-Vir

Cherry_associated_luteovirus

P1-P2_polyprotein__YP_009316228__Cherry_associated_luteovirus__1912598

Identity

71.9 mean pLDDT

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Luteovirus› Cherry-associated_luteovirus

TaxID: 1912598

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 227-328

PDB

Domain cluster: rep: P1__YP_009552849__Apple_luteovirus_1__2170544__D293-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08467.16 best	Luteo_P1-P2	46.7	3.80e-12	100.0%	28.3%

D2 high residues 732-761_763-858

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	99.5	2.80e-28	100.0%	26.5%

D3 medium residues 1-94_142-215

PDB

D4 medium residues 379-449_502-531_629-646

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337688__Beihai_tombus-like_virus_7__1922728__D528-588_642-697_774-796

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.61	55.0	3.86e-01	96.6%	73.7%

D5 medium residues 450-501_532-559_605-628

PDB

Domain cluster: rep: replicase__YP_002333476__Soybean_yellow_mottle_mosaic_virus__578361__D327-366_395-422_476-495

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r6aC01	1.10.860.10	Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A	0.57	27.0	2.82e-01	82.7%	44.8%
2janA02	1.10.240.10	Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase	0.55	39.0	4.01e-01	82.7%	77.2%
4dmbB00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.53	37.0	3.09e-01	73.1%	68.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5036962	1075.3.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1	0.52	43.0	3.38e-01	93.3%	89.2%
4680974	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.50	37.0	3.88e-01	95.2%	85.3%

D6 medium residues 560-604_647-731

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	30.1	3.30e-07	97.7%	23.6%
PF00998.29	RdRP_3	133.6	1.20e-38	66.1%	17.7%
PF00998.29	RdRP_3	65.5	5.50e-18	36.1%	9.3%