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P143

Euk-Vir

Pseudoplusia_includens_SNPV_IE

P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:
YP_009116998 ↗
Protein ID:
P143
Kingdom:
euk

Quality

77.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 182-292
PDB
Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 75.9 2.10e-21 97.3% 7.4%
D2 high residues 1105-1199
PDB
Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 47.2 9.80e-13 100.0% 8.1%
D3 medium residues 21-65_78-129_154-167
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 33.0 1.90e-08 79.3% 4.8%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.59 31.0 3.81e-01 93.7% 82.1%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.57 28.0 2.98e-01 90.1% 52.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.55 29.0 3.42e-01 92.8% 75.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.55 27.0 3.45e-01 91.9% 82.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 32.0 3.70e-01 95.5% 82.9%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 30.0 3.36e-01 94.6% 75.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060834 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.54 29.0 3.71e-01 94.6% 95.0%
3675525 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 28.0 3.52e-01 98.2% 86.8%
D4 medium residues 302-414
PDB
Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 46.0 2.20e-12 100.0% 9.7%
D5 medium residues 559-634_819-841
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 37.8 6.60e-10 80.8% 6.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.78 54.0 5.11e-01 70.7% 69.3%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.75 48.0 4.32e-01 71.7% 48.9%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.69 48.0 5.04e-01 76.8% 78.0%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 54.0 4.19e-01 88.9% 39.9%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.67 56.0 4.32e-01 89.9% 86.0%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.65 48.0 3.74e-01 77.8% 66.4%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 51.0 3.62e-01 87.9% 44.3%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 44.0 3.22e-01 74.7% 32.1%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.61 47.0 3.25e-01 81.8% 40.0%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 42.0 4.14e-01 71.7% 69.8%
2xgjA04 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.61 52.0 4.72e-01 92.9% 78.8%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 44.0 4.43e-01 75.8% 86.9%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.47e-01 80.8% 93.5%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 48.0 4.19e-01 88.9% 89.4%
6m9sB01 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.57 48.0 3.78e-01 93.9% 80.6%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 40.0 4.46e-01 83.8% 92.4%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 48.0 3.34e-01 91.9% 66.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.57 42.0 3.89e-01 79.8% 86.5%
5azsC01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.56 48.0 3.31e-01 94.9% 81.8%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.55 40.0 3.41e-01 78.8% 46.1%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 44.0 3.93e-01 88.9% 88.2%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 47.0 3.57e-01 96.0% 84.0%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.53 39.0 3.28e-01 80.8% 74.9%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 47.0 3.49e-01 99.0% 82.0%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 38.0 3.98e-01 76.8% 97.7%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.52 36.0 3.17e-01 75.8% 45.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390311 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.65 47.0 4.56e-01 74.7% 87.3%
3389693 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.65 49.0 4.40e-01 78.8% 92.6%
3975556 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.65 52.0 3.65e-01 86.9% 42.2%
3987006 5086.1.1.93 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA 0.63 47.0 4.19e-01 78.8% 95.7%
3223800 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.62 53.0 4.52e-01 91.9% 61.9%
3934585 3755.3.1.465 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.62 48.0 4.28e-01 85.9% 96.7%
3403179 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.62 45.0 4.49e-01 77.8% 92.4%
3967813 5086.1.1.93 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA 0.60 45.0 4.17e-01 79.8% 96.2%
4026926 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.60 47.0 4.26e-01 83.8% 94.1%
3356933 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 47.0 4.04e-01 84.8% 65.2%
3720395 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.59 43.0 2.99e-01 77.8% 85.8%
3718408 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 46.0 4.50e-01 84.8% 83.6%
2145114 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 47.0 3.31e-01 89.9% 42.4%
3978264 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 40.0 3.48e-01 71.7% 99.3%
4983459 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 42.0 2.81e-01 79.8% 19.8%
3782889 4177.1.1.5 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.55 47.0 3.53e-01 88.9% 84.7%
3464011 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 48.0 3.13e-01 96.0% 87.2%
5041261 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 43.0 3.91e-01 84.8% 71.9%
4237257 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.55 41.0 4.27e-01 91.9% 86.7%
4175809 5086.1.1.88 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CyaD 0.54 38.0 3.18e-01 71.7% 89.1%
3971026 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.54 39.0 3.62e-01 75.8% 91.2%
4249486 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.53 43.0 3.15e-01 85.9% 81.7%
D6 medium residues 635-647_667-781
PDB
Domain cluster: rep: DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D726-834
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 29.3 2.50e-07 93.8% 7.2%
D7 medium residues 842-899_1039-1076
PDB
Domain cluster: rep: helicase__YP_008720025__Clostera_anastomosis_granulovirus_Henan__1986291__D754-824_981-1016
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 53.7 1.00e-14 61.5% 4.4%
PF04735.17 Baculo_helicase 30.7 9.10e-08 40.6% 2.8%