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P1

Euk-Vir

Cassava_brown_streak_virus

P1__YP_007032438__Cassava_brown_streak_virus__137758

Identity

Accession:
YP_007032438 ↗
Protein ID:
P1
Kingdom:
euk

Quality

63.7 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Ipomovirus› Cassava_brown_streak_virus

TaxID: 137758

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-146
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 28.0 3.67e-01 98.8% 93.0%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 31.0 3.73e-01 84.5% 85.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671796 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.55 34.0 3.62e-01 100.0% 70.7%
3886750 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 29.0 3.36e-01 70.2% 69.8%
3980811 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.54 28.0 3.31e-01 77.4% 71.7%
3435471 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.54 34.0 3.66e-01 96.4% 77.1%
3597842 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.54 29.0 3.39e-01 70.2% 73.3%
3746817 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 29.0 3.10e-01 70.2% 60.0%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.52 29.0 3.34e-01 86.9% 76.7%
3622446 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 28.0 3.00e-01 71.4% 62.9%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.50 28.0 2.93e-01 70.2% 58.2%
D2 high residues 239-357
PDB
Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13611.13 best Peptidase_S76 107.6 7.50e-31 58.8% 60.3%