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P1
Euk-VirDaphne_virus_Y
P1__YP_009509098__Daphne_virus_Y__282712
Identity
- Accession:
- YP_009509098 ↗
- Protein ID:
- P1
- Kingdom:
- euk
Quality
68.1
mean pLDDT
Taxonomy
TaxID: 282712
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 157-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01577.23 best | Peptidase_S30 | 22.7 | 9.80e-05 | 96.0% | 24.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.68 | 48.0 | 3.94e-01 | 75.0% | 92.5% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 34.0 | 2.47e-01 | 100.0% | 18.1% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 34.0 | 3.26e-01 | 98.7% | 46.2% |
| 4g41A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 47.0 | 3.40e-01 | 96.1% | 56.8% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.55 | 39.0 | 4.08e-01 | 98.7% | 85.5% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 36.0 | 2.89e-01 | 80.3% | 35.1% |
| 4qdiA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 37.0 | 2.70e-01 | 76.3% | 65.5% |
| 1g57A00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.51 | 44.0 | 3.24e-01 | 96.1% | 97.1% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.51 | 42.0 | 3.82e-01 | 94.7% | 90.9% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 37.0 | 3.46e-01 | 94.7% | 62.8% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 39.0 | 3.33e-01 | 97.4% | 49.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930519 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.80 | 47.0 | 3.60e-01 | 100.0% | 29.0% |
| 4981101 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.73 | 46.0 | 3.71e-01 | 100.0% | 35.6% |
| 2966700 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.66 | 51.0 | 3.01e-01 | 81.6% | 79.1% |
| 3952658 | 2484.1.1.113 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family2 | 0.65 | 39.0 | 3.37e-01 | 100.0% | 36.8% |
| 4282149 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.64 | 39.0 | 3.38e-01 | 100.0% | 38.3% |
| 4965137 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 38.0 | 3.16e-01 | 94.7% | 34.1% |
| 3496925 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.60 | 41.0 | 2.92e-01 | 71.1% | 83.7% |
| 5041912 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.58 | 48.0 | 3.14e-01 | 92.1% | 41.9% |
| 3387137 | 297.1.1.0 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB | 0.58 | 50.0 | 3.99e-01 | 98.7% | 69.4% |
| 5004521 | 4317.1.1.0 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like | 0.56 | 34.0 | 3.80e-01 | 72.4% | 78.3% |
| 3972594 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.53 | 40.0 | 2.81e-01 | 81.6% | 27.5% |
| 3306172 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.53 | 39.0 | 3.29e-01 | 81.6% | 62.1% |
| 3998167 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.53 | 38.0 | 2.70e-01 | 94.7% | 23.6% |
| 4944313 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 40.0 | 3.28e-01 | 80.3% | 76.3% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.52 | 37.0 | 3.47e-01 | 78.9% | 58.0% |
| 5063524 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.52 | 44.0 | 3.49e-01 | 100.0% | 44.5% |
| 3589304 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.52 | 39.0 | 3.93e-01 | 81.6% | 96.0% |
| 4305933 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 34.0 | 3.82e-01 | 71.1% | 92.7% |
| 3983524 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.52 | 46.0 | 3.71e-01 | 100.0% | 94.6% |
| 4003797 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.51 | 34.0 | 2.93e-01 | 75.0% | 41.6% |
D2
medium
residues 233-296
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01577.23 best | Peptidase_S30 | 42.0 | 1.30e-10 | 98.4% | 24.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7mdhA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 36.0 | 2.72e-01 | 76.6% | 82.7% |