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P1
Euk-VirZucchini_shoestring_virus
P1__YP_009667090__Zucchini_shoestring_virus__1679239
Identity
- Accession:
- YP_009667090 ↗
- Protein ID:
- P1
- Kingdom:
- euk
Quality
69.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Zucchini_shoestring_virus
TaxID: 1679239
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-171
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12523.14 best | DUF3725 | 66.1 | 3.80e-18 | 52.2% | 94.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 30.0 | 3.55e-01 | 78.3% | 73.1% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 29.0 | 3.50e-01 | 89.1% | 78.4% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 33.0 | 3.74e-01 | 81.2% | 82.0% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 29.0 | 3.56e-01 | 87.7% | 87.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.53 | 29.0 | 3.68e-01 | 76.8% | 91.0% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 24.0 | 3.09e-01 | 70.3% | 75.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3443256 | 3161.1.1.1 ↗ | alpha duplicates or obligate multimers › LOB domain › LOB domain › LOB domain › LOB | 0.55 | 25.0 | 3.02e-01 | 92.8% | 63.3% |
| 4941346 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.51 | 28.0 | 3.59e-01 | 73.2% | 96.0% |
| 3067223 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.51 | 39.0 | 3.43e-01 | 81.2% | 95.8% |
D2
high
residues 435-572
Domain cluster:
rep: P1__YP_010088119__Dendrobium_chlorotic_mosaic_virus__2562807__D286-419
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01577.23 best | Peptidase_S30 | 100.0 | 2.50e-28 | 100.0% | 55.9% |