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P1

Euk-Vir

Pumpkin_polerovirus

P1__YP_010087204__Pumpkin_polerovirus__2518373

Identity

Accession:
YP_010087204 ↗
Protein ID:
P1
Kingdom:
euk

Quality

67.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Pumpkin_polerovirus

TaxID: 2518373

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 226-405
PDB
Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02122.22 best Peptidase_S39 137.8 5.10e-40 100.0% 85.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 39.0 5.27e-01 100.0% 87.1%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 70.0 6.73e-01 100.0% 86.9%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 63.0 6.47e-01 100.0% 89.5%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 71.0 6.76e-01 99.4% 88.7%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 36.0 4.79e-01 85.0% 88.5%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 37.0 5.05e-01 100.0% 96.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 19.0 3.21e-01 85.0% 82.5%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 33.0 4.05e-01 85.0% 91.2%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 30.0 3.67e-01 75.6% 91.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.85 80.0 7.97e-01 100.0% 94.6%
2710030 1.1.5.12 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 0.85 79.0 7.70e-01 100.0% 90.6%
4822902 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 65.0 6.92e-01 91.7% 93.7%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.81 77.0 6.63e-01 100.0% 86.8%
3517637 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 77.0 6.62e-01 100.0% 86.0%
5016520 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 74.0 6.69e-01 99.4% 92.8%
3963124 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 74.0 6.92e-01 100.0% 87.9%
3225260 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.78 74.0 6.35e-01 100.0% 85.3%
4028467 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 73.0 6.17e-01 98.3% 68.0%
257 1.1.5.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 0.76 69.0 6.45e-01 98.3% 78.1%
3464880 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 72.0 6.73e-01 99.4% 85.1%
3816593 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 72.0 6.64e-01 98.9% 87.7%
4647114 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 72.0 6.44e-01 99.4% 80.8%
3899289 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 72.0 6.10e-01 100.0% 85.4%
3900731 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.76 72.0 6.13e-01 100.0% 85.8%
4625374 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 72.0 6.53e-01 99.4% 84.3%
3213725 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.76 71.0 6.09e-01 100.0% 85.0%
3493511 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 71.0 6.41e-01 100.0% 78.3%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.75 70.0 5.97e-01 98.9% 84.8%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 70.0 6.48e-01 100.0% 90.9%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 69.0 6.08e-01 99.4% 85.6%
3434538 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 68.0 6.41e-01 100.0% 91.2%
3816594 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 68.0 6.13e-01 100.0% 88.7%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 68.0 6.09e-01 99.4% 86.7%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 66.0 6.48e-01 97.2% 89.7%
22055 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 65.0 6.43e-01 96.1% 93.2%
4119987 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 66.0 6.10e-01 98.3% 87.1%
3190386 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 66.0 5.98e-01 99.4% 87.7%
4015954 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 65.0 5.94e-01 99.4% 87.7%
4089092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 65.0 5.91e-01 99.4% 88.9%
3416144 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 64.0 6.08e-01 97.8% 87.6%
4614564 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 62.0 6.03e-01 96.1% 86.7%
4655762 1.1.17.21 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S55 0.68 59.0 5.64e-01 91.7% 93.7%
3212847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 59.0 5.69e-01 97.2% 84.4%
D2 medium residues 108-201
PDB
Domain cluster: representative