P1

Euk-Vir

Platycodon_mild_mottle_virus

P1__YP_010088109__Platycodon_mild_mottle_virus__2320870

Identity

77.3 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Platycodon_mild_mottle_virus

TaxID: 2320870

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 162-301

PDB

Domain cluster: rep: P1__YP_010088119__Dendrobium_chlorotic_mosaic_virus__2562807__D286-419

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	56.0	6.80e-15	96.4%	52.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t6aA02	3.30.310.120	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein	0.57	29.0	3.79e-01	79.3%	87.2%
1xkiA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.54	30.0	3.17e-01	90.0%	57.0%
4s21B02	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.51	30.0	3.23e-01	98.6%	66.4%
6zepA01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.50	41.0	3.14e-01	87.9%	64.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5016546	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	27.0	3.46e-01	75.0%	86.7%
360905	244.1.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C	0.51	31.0	3.43e-01	96.4%	75.9%
3270992	216.1.1.3 ↗	a+b two layers › UBC-like › UBC-like › UBC-like › UEV	0.51	33.0	3.31e-01	87.1%	63.6%