P1_protein

Euk-Vir

Sugarcane_mosaic_virus

P1_protein__NP_734133__Sugarcane_mosaic_virus__12224

Identity

79.4 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Sugarcane_mosaic_virus

TaxID: 12224

View cluster (16 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-232

PDB

Domain cluster: rep: P1__YP_010088119__Dendrobium_chlorotic_mosaic_virus__2562807__D286-419

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	102.7	3.70e-29	100.0%	55.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x5cA01	3.30.70.3590	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	27.0	3.19e-01	78.1%	65.9%
1ko2A00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.52	38.0	3.16e-01	93.8%	42.2%
5lohB01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	26.0	3.24e-01	82.0%	79.7%
1d5aA01	3.30.342.10	Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1	0.51	33.0	3.17e-01	96.9%	55.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4965206	4221.1.1.3 ↗	a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008	0.64	29.0	3.82e-01	79.7%	77.1%
184887	719.1.1.2 ↗	beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF	0.62	23.0	3.48e-01	72.7%	83.7%
5021439	330.1.1.1 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm	0.54	21.0	2.69e-01	71.9%	56.0%
5024203	330.10.1.0 ↗	a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain	0.52	23.0	2.70e-01	74.2%	57.8%