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P1_protein

Euk-Vir

Telosma_mosaic_virus

P1_protein__YP_001816826__Telosma_mosaic_virus__400394

Identity

Accession:: YP_001816826 ↗
Protein ID:: P1_protein
Kingdom:: euk

Quality

80.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Telosma_mosaic_virus

TaxID: 400394

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-132

PDB

Domain cluster: rep: P1_protein__YP_001974436__Fritillary_virus_Y__332471__D63-123

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7kfuC02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.59	46.0	3.24e-01	81.2%	44.2%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	39.0	3.52e-01	81.2%	52.3%
5e1wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	39.0	3.10e-01	72.5%	61.9%
4hn3A00	3.10.570.10	Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain	0.53	37.0	2.47e-01	73.8%	41.6%
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	39.0	3.57e-01	81.2%	60.4%
3j7aY00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	37.0	2.99e-01	90.0%	39.6%
6lw5A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	41.0	2.85e-01	90.0%	45.7%
3thxB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.51	35.0	2.99e-01	70.0%	71.9%
2xzmT00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	38.0	3.11e-01	80.0%	76.7%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3478703	192.29.1.24 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237	0.70	38.0	2.85e-01	80.0%	21.5%
3538408	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.70	33.0	3.11e-01	72.5%	37.9%
4033043	616.1.1.41 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4	0.65	38.0	3.68e-01	81.2%	50.0%
3718200	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.65	34.0	2.86e-01	73.8%	32.0%
4023956	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.61	38.0	3.25e-01	77.5%	38.5%
3287147	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.60	34.0	2.71e-01	78.8%	25.9%
3364027	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.59	41.0	3.00e-01	71.2%	45.6%
None	—		0.59	48.0	3.15e-01	90.0%	38.3%
3379132	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.58	40.0	2.67e-01	71.2%	28.7%
3784236	807.1.1.0 ↗	a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain)	0.57	41.0	3.67e-01	75.0%	78.2%
4960388	5048.1.1.2 ↗	alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › Form_Nir_trans	0.56	43.0	2.93e-01	82.5%	48.1%
4580985	101.1.2.603 ↗	alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9	0.53	39.0	2.59e-01	78.8%	61.6%
4025072	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.53	38.0	3.36e-01	82.5%	52.2%
3474413	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.53	38.0	2.47e-01	76.2%	98.3%
4232356	101.1.2.517 ↗	alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.52	44.0	2.73e-01	96.2%	28.3%
3726808	4163.1.1.1 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5	0.52	39.0	3.00e-01	78.8%	57.8%
3364025	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.51	43.0	2.96e-01	95.0%	52.8%
4940567	101.1.2.18 ↗	alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e	0.51	35.0	2.91e-01	88.7%	41.0%
3530542	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	40.0	2.67e-01	85.0%	35.8%
3917696	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	41.0	3.10e-01	88.7%	80.5%
1421671	101.1.2.18 ↗	alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e	0.51	38.0	3.06e-01	80.0%	74.7%
4311588	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	35.0	2.43e-01	72.5%	43.3%
3718609	109.4.1.726 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DHC_N1	0.50	38.0	2.79e-01	83.7%	89.4%

D2 high residues 182-316

PDB

Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	108.9	4.60e-31	100.0%	55.9%