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P1_protein

Euk-Vir

Wild_tomato_mosaic_virus

P1_protein__YP_001816846__Wild_tomato_mosaic_virus__400396

Identity

Accession:
YP_001816846 ↗
Protein ID:
P1_protein
Kingdom:
euk

Quality

78.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Wild_tomato_mosaic_virus

TaxID: 400396

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-104
PDB
Domain cluster: rep: N-terminal_protein_P1__NP_982335__Chilli_veinal_mottle_virus__52280__D52-106
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.76e-01 76.2% 82.5%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 44.0 3.88e-01 77.8% 59.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 45.0 3.78e-01 82.5% 46.8%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 3.60e-01 76.2% 63.8%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.23e-01 71.4% 43.4%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 43.0 3.64e-01 82.5% 48.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.45e-01 73.0% 80.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.28e-01 73.0% 48.1%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.56 37.0 2.50e-01 71.4% 19.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 2.92e-01 71.4% 51.4%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.55 42.0 3.13e-01 85.7% 68.8%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 39.0 2.45e-01 82.5% 14.2%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.54 46.0 2.73e-01 98.4% 64.7%
1uhvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 36.0 2.36e-01 76.2% 96.5%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.17e-01 71.4% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978597 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 48.0 3.44e-01 74.6% 56.8%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 45.0 3.52e-01 98.4% 36.2%
4025349 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.62 45.0 3.46e-01 76.2% 46.9%
4383741 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 42.0 3.81e-01 71.4% 71.8%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 47.0 3.81e-01 82.5% 43.3%
4546696 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 41.0 3.70e-01 71.4% 80.0%
4295958 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 44.0 3.10e-01 79.4% 55.0%
3392569 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 45.0 3.63e-01 82.5% 40.8%
5041715 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 46.0 3.83e-01 84.1% 59.1%
4995244 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 44.0 3.68e-01 82.5% 46.4%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 44.0 3.61e-01 82.5% 44.3%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 45.0 3.65e-01 82.5% 45.2%
4949735 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 39.0 3.57e-01 71.4% 71.8%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 47.0 3.80e-01 88.9% 49.2%
3999359 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 41.0 3.34e-01 76.2% 72.8%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 44.0 3.64e-01 82.5% 47.3%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 43.0 3.53e-01 82.5% 44.3%
3582184 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.19e-01 96.8% 35.4%
3753321 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 45.0 2.86e-01 93.7% 40.0%
4022379 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 42.0 3.21e-01 87.3% 36.0%
3901998 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 45.0 2.88e-01 93.7% 41.9%
4983405 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 3.16e-01 85.7% 70.6%
5014663 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.53 43.0 2.72e-01 88.9% 30.3%
3216054 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.53 42.0 2.69e-01 87.3% 37.0%
3922539 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 44.0 2.88e-01 98.4% 73.8%
4607845 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 43.0 2.67e-01 95.2% 59.7%
D2 high residues 157-297
PDB
Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01577.23 best Peptidase_S30 59.7 5.10e-16 99.3% 55.5%