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P1_protein

Euk-Vir

Cotton_leafroll_dwarf_virus

P1_protein__YP_003915149__Cotton_leafroll_dwarf_virus__312295

Identity

Accession:
YP_003915149 ↗
Protein ID:
P1_protein
Kingdom:
euk

Quality

64.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Cotton_leafroll_dwarf_virus

TaxID: 312295

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 115-196
PDB
Domain cluster: representative
D2 medium residues 197-225_312-397
PDB
Domain cluster: rep: P1-P2_fusion_protein__YP_009254738__Pepo_aphid-borne_yellows_virus__1462681__D328-414
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02122.22 best Peptidase_S39 90.0 2.30e-25 76.5% 44.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h7oB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 57.0 5.78e-01 74.8% 100.0%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 61.0 6.48e-01 82.6% 98.0%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 59.0 5.82e-01 80.9% 99.2%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 65.0 6.52e-01 90.4% 100.0%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 57.0 4.85e-01 79.1% 98.3%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 58.0 6.23e-01 82.6% 93.1%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 60.0 5.96e-01 84.3% 99.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 5.72e-01 73.9% 96.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 50.0 4.54e-01 71.3% 89.6%
1gvzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 56.0 5.53e-01 82.6% 100.0%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 51.0 5.59e-01 75.7% 100.0%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 51.0 5.53e-01 76.5% 98.9%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 46.0 4.16e-01 73.9% 88.1%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.55 36.0 4.16e-01 87.0% 100.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.53 43.0 4.42e-01 97.4% 92.7%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.90e-01 78.3% 87.5%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 42.0 3.59e-01 88.7% 86.5%
1pbyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 30.0 3.56e-01 77.4% 90.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403377 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 64.0 4.83e-01 82.6% 90.8%
None — 0.79 68.0 5.42e-01 91.3% 100.0%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.79 68.0 5.38e-01 90.4% 100.0%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 69.0 5.47e-01 93.0% 99.1%
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 62.0 5.18e-01 81.7% 100.0%
None — 0.79 67.0 5.39e-01 90.4% 100.0%
3216440 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.78 63.0 4.76e-01 85.2% 91.5%
None — 0.78 67.0 5.33e-01 90.4% 100.0%
3464880 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 62.0 4.93e-01 82.6% 95.8%
4028467 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 58.0 4.31e-01 78.3% 71.6%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 58.0 4.61e-01 80.0% 88.4%
3222818 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.74 60.0 4.56e-01 85.2% 89.8%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.66 51.0 4.24e-01 80.9% 97.0%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 57.0 4.71e-01 93.9% 62.6%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 58.0 4.67e-01 94.8% 66.7%
3968865 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 44.0 4.77e-01 71.3% 87.4%
2141908 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 56.0 4.60e-01 96.5% 66.2%
3574238 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 34.0 3.60e-01 76.5% 67.0%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 33.0 3.69e-01 75.7% 76.7%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 32.0 3.59e-01 75.7% 75.6%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.52 40.0 2.65e-01 80.0% 59.8%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.51 41.0 3.78e-01 87.8% 81.3%
D3 medium residues 226-311
PDB
Domain cluster: rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02122.22 best Peptidase_S39 91.8 6.10e-26 100.0% 41.4%