P1_protein

Euk-Vir

Yambean_mosaic_virus

P1_protein__YP_004940319__Yambean_mosaic_virus__418827

Identity

80.9 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Yambean_mosaic_virus

TaxID: 418827

View cluster (16 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 183-316

PDB

Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	116.6	2.00e-33	100.0%	54.7%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7dpyB01	2.40.128.200	Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor	0.56	31.0	3.82e-01	84.3%	88.0%
1cg2A01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.53	44.0	3.46e-01	89.6%	75.3%
1f39A00	2.10.109.10	Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A	0.52	27.0	3.10e-01	79.9%	63.4%
2x5cA01	3.30.70.3590	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	24.0	2.90e-01	76.9%	63.7%
1b24A01	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.51	29.0	3.33e-01	76.9%	74.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3378755	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.53	32.0	3.31e-01	90.3%	62.4%
4238204	2.1.1.15 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon	0.52	28.0	3.14e-01	73.9%	65.7%

D2 medium residues 62-140

PDB

Domain cluster: rep: P1_protein__YP_001974436__Fritillary_virus_Y__332471__D63-123

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	21.6	2.20e-04	81.0%	24.5%