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P1_protein

Euk-Vir

Basella_rugose_mosaic_virus

P1_protein__YP_006405404__Basella_rugose_mosaic_virus__373398

Identity

Accession:: YP_006405404 ↗
Protein ID:: P1_protein
Kingdom:: euk

Quality

76.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Basella_rugose_mosaic_virus

TaxID: 373398

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 175-308

PDB

Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	82.4	5.70e-23	100.0%	54.3%

D2 medium residues 52-121

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.61	46.0	3.99e-01	80.0%	53.8%
3cuoD00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.60	40.0	3.63e-01	70.0%	51.1%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	47.0	3.97e-01	91.4%	56.9%
1mhyD00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.54	45.0	2.77e-01	98.6%	49.8%
3oqgA00	3.40.1440.50	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease ›	0.54	37.0	2.89e-01	74.3%	64.2%
4uhiA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.54	42.0	2.62e-01	85.7%	48.8%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4025349	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.76	48.0	3.80e-01	91.4%	34.6%
3628456	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.72	47.0	3.83e-01	90.0%	36.7%
3935332	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.64	48.0	3.83e-01	78.6%	43.8%
4457710	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.62	47.0	3.87e-01	80.0%	48.3%
138578	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.61	41.0	3.70e-01	71.4%	50.0%
3614763	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.58	48.0	3.91e-01	90.0%	50.0%
3228583	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.57	49.0	4.04e-01	90.0%	54.8%
5014663	2004.1.1.85 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase	0.57	42.0	2.75e-01	80.0%	28.8%
3392569	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.56	47.0	3.83e-01	92.9%	50.4%
3712081	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	47.0	4.01e-01	90.0%	57.3%
4017372	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	48.0	3.95e-01	90.0%	54.8%
3550136	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	48.0	3.96e-01	90.0%	54.8%
3579472	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.55	46.0	3.75e-01	91.4%	64.6%
3593339	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.55	47.0	3.89e-01	90.0%	54.8%
4869676	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.52	37.0	2.71e-01	77.1%	64.0%
3750883	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.52	48.0	3.51e-01	100.0%	100.0%
4080548	223.1.1.176 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › KaiB	0.51	38.0	3.25e-01	81.4%	100.0%