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P1_protein
Euk-VirPecan_mosaic-associated_virus
P1_protein__YP_009256204_P1_protein__Pecan_mosaic-associated_virus__1856031
Identity
- Accession:
- YP_009256204_P1_protein ↗
- Protein ID:
- P1_protein
- Kingdom:
- euk
Quality
77.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Pecan_mosaic-associated_virus
TaxID: 1856031
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-204
Domain cluster:
rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01577.23 best | Peptidase_S30 | 107.7 | 1.10e-30 | 92.1% | 51.8% |
| PF13611.13 | Peptidase_S76 | 28.3 | 2.80e-06 | 60.0% | 52.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.53 | 24.0 | 3.37e-01 | 77.9% | 91.9% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.52 | 32.0 | 3.14e-01 | 93.6% | 55.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786329 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.59 | 24.0 | 3.58e-01 | 80.7% | 90.9% |
| 4939349 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.55 | 27.0 | 2.93e-01 | 91.4% | 53.9% |
| 3991383 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 26.0 | 3.11e-01 | 79.3% | 66.7% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 25.0 | 3.09e-01 | 96.4% | 71.8% |
| 3523669 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.51 | 28.0 | 3.42e-01 | 94.3% | 82.2% |
| 4066101 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 27.0 | 3.16e-01 | 91.4% | 72.6% |