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P1_protein

Euk-Vir

Cowpea_polerovirus_2

P1_protein__YP_009352253__Cowpea_polerovirus_2__1913125

Identity

Accession:
YP_009352253 ↗
Protein ID:
P1_protein
Kingdom:
euk

Quality

64.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Cowpea_polerovirus_2

TaxID: 1913125

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 95-208
PDB
Domain cluster: representative
D2 medium residues 209-231_319-467
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02122.22 best Peptidase_S39 70.9 1.50e-19 77.9% 49.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.86 34.0 5.51e-01 74.4% 93.1%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 42.0 5.42e-01 82.6% 90.1%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 45.0 5.89e-01 84.3% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 47.0 5.73e-01 88.4% 93.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 42.0 5.27e-01 80.8% 97.2%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 41.0 5.21e-01 87.2% 100.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 44.0 4.20e-01 86.6% 97.0%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 4.22e-01 75.6% 94.4%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 30.0 3.58e-01 73.8% 86.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4254177 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.70 49.0 3.94e-01 71.5% 80.6%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 43.0 5.18e-01 94.8% 98.3%
3503044 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 47.0 4.63e-01 75.6% 100.0%
4655762 1.1.17.21 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S55 0.61 45.0 4.21e-01 74.4% 86.3%
3512547 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 49.0 4.82e-01 92.4% 81.7%
3504295 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.59 47.0 4.90e-01 92.4% 88.7%
3505064 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.59 49.0 4.16e-01 86.0% 92.8%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.59 51.0 4.34e-01 91.3% 93.6%
3454710 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 47.0 4.28e-01 83.7% 93.6%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 43.0 4.09e-01 95.3% 64.7%
3393622 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.57 48.0 4.34e-01 89.0% 99.1%
3392873 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 47.0 4.30e-01 88.4% 97.3%
22055 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 41.0 3.98e-01 74.4% 81.2%
3403181 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 47.0 4.24e-01 89.0% 94.9%
3504279 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.56 48.0 4.13e-01 97.1% 60.8%
4244642 6151.1.1.1 ↗ alpha bundles › Helical bundle domain in S46 peptidase › Helical bundle domain in S46 peptidase › Helical bundle domain in S46 peptidase › Peptidase_S46 0.56 46.0 3.48e-01 86.6% 98.2%
4028467 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 45.0 3.76e-01 84.9% 74.9%
4625374 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 44.0 3.92e-01 82.6% 91.3%
4441614 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 45.0 3.88e-01 85.5% 96.1%
3948218 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.54 44.0 3.92e-01 86.0% 91.4%
3462061 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 45.0 4.14e-01 87.8% 98.6%
3816593 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 43.0 3.90e-01 82.6% 92.3%
4822902 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.53 42.0 4.36e-01 92.4% 88.6%
3284172 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.53 45.0 4.26e-01 90.7% 93.7%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 45.0 4.15e-01 91.3% 99.1%
3280223 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 43.0 4.08e-01 94.8% 74.9%
4647114 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 44.0 3.94e-01 90.1% 90.4%
3611195 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 29.0 3.55e-01 78.5% 85.5%
3469033 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 43.0 3.83e-01 90.1% 96.8%
4516083 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.50 28.0 3.40e-01 76.7% 83.6%
D3 medium residues 232-318
PDB
Domain cluster: rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02122.22 best Peptidase_S39 98.5 5.70e-28 100.0% 41.9%