P1_protein

Euk-Vir

Tomato_mild_mottle_virus

P1_protein__YP_009509082__Tomato_mild_mottle_virus__178599

Identity

65.8 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Ipomovirus› Tomato_mild_mottle_virus

TaxID: 178599

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-119

PDB

Domain cluster: rep: P1__YP_007032438__Cassava_brown_streak_virus__137758__D63-146

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2poiA00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.57	45.0	4.70e-01	98.9%	94.9%
1i3oF00	1.10.1170.10	Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A	0.57	41.0	4.08e-01	95.5%	72.0%
2hf1A01	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.57	30.0	3.72e-01	79.5%	83.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3998148	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.64	30.0	4.11e-01	95.5%	97.5%
3261011	375.1.1.85 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27	0.58	30.0	3.84e-01	81.8%	88.0%
3663342	4294.1.1.2 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p	0.58	32.0	4.08e-01	81.8%	96.0%
4280908	4294.1.1.2 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p	0.56	30.0	3.92e-01	78.4%	100.0%
None	—		0.56	42.0	2.53e-01	79.5%	45.9%
3457638	4357.1.1.6 ↗	beta barrels › WWE domain › WWE domain › WWE domain › WWE_5	0.54	30.0	3.02e-01	70.5%	52.2%
3435471	376.1.4.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog	0.52	34.0	3.69e-01	100.0%	82.9%
3671796	376.1.6.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain	0.51	33.0	3.57e-01	100.0%	77.3%

D2 high residues 192-326

PDB

Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01577.23 best	Peptidase_S30	28.4	1.80e-06	99.3%	54.7%
PF13611.13	Peptidase_S76	37.5	3.80e-09	63.7%	71.1%