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P1_protein

Euk-Vir

Konjac_mosaic_virus

P1_protein__YP_529490__Konjac_mosaic_virus__322053

Identity

Accession:
YP_529490 ↗
Protein ID:
P1_protein
Kingdom:
euk

Quality

75.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Konjac_mosaic_virus

TaxID: 322053

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-142
PDB
Domain cluster: rep: P1_protein__YP_001974436__Fritillary_virus_Y__332471__D63-123
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.64 39.0 2.89e-01 87.8% 23.4%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 42.0 3.40e-01 85.4% 38.5%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.61 38.0 3.28e-01 86.6% 40.8%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 41.0 2.81e-01 78.0% 50.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 40.0 3.68e-01 79.3% 61.3%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 36.0 3.11e-01 70.7% 86.4%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 38.0 3.68e-01 76.8% 68.1%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.52e-01 72.0% 33.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 3.57e-01 80.5% 61.5%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.48e-01 73.2% 33.6%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 2.84e-01 72.0% 60.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.75 37.0 2.74e-01 70.7% 20.0%
4029803 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 34.0 2.90e-01 70.7% 30.0%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 37.0 3.25e-01 80.5% 36.8%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.65 37.0 2.87e-01 80.5% 27.6%
4178886 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 38.0 3.57e-01 73.2% 53.0%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.56 39.0 3.79e-01 86.6% 64.2%
5000789 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 38.0 3.48e-01 75.6% 54.3%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 40.0 3.93e-01 75.6% 75.6%
4067342 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.55 43.0 2.83e-01 82.9% 55.0%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 41.0 3.56e-01 76.8% 55.8%
4410759 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 37.0 3.29e-01 73.2% 48.7%
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 39.0 3.80e-01 76.8% 68.9%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 40.0 3.59e-01 79.3% 60.9%
5060078 2484.1.1.291 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_V 0.53 48.0 2.81e-01 100.0% 30.4%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 40.0 3.49e-01 79.3% 54.2%
185834 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.52 46.0 2.99e-01 100.0% 75.2%
3716174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 40.0 3.60e-01 79.3% 64.5%
139279 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 38.0 3.68e-01 76.8% 68.1%
3960457 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 3.19e-01 80.5% 94.8%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 39.0 3.57e-01 79.3% 62.7%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 40.0 3.54e-01 80.5% 58.3%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 38.0 3.66e-01 76.8% 70.5%
3741919 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 39.0 3.64e-01 79.3% 68.0%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.51 39.0 3.39e-01 80.5% 68.5%
4928786 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.51 36.0 2.70e-01 74.4% 85.6%
3937187 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 38.0 3.44e-01 79.3% 59.1%
3099713 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.50 34.0 2.84e-01 70.7% 49.4%
D2 high residues 193-327
PDB
Domain cluster: rep: P1__YP_010088119__Dendrobium_chlorotic_mosaic_virus__2562807__D286-419
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01577.23 best Peptidase_S30 118.4 5.80e-34 99.3% 54.7%