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P1_protein

Euk-Vir

Wisteria_vein_mosaic_virus

P1_protein__YP_842350__Wisteria_vein_mosaic_virus__201862

Identity

Accession:
YP_842350 ↗
Protein ID:
P1_protein
Kingdom:
euk

Quality

80.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Wisteria_vein_mosaic_virus

TaxID: 201862

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 183-316
PDB
Domain cluster: rep: P1__YP_006908980__Rose_yellow_mosaic_virus__1048434__D303-423
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01577.23 best Peptidase_S30 106.7 2.20e-30 99.2% 54.3%
D2 medium residues 58-131
PDB
Domain cluster: rep: P1_protein__YP_001974436__Fritillary_virus_Y__332471__D63-123
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.46e-01 73.0% 81.7%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 40.0 3.69e-01 71.6% 47.9%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.64 45.0 3.11e-01 79.7% 21.5%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.60 41.0 2.92e-01 70.3% 89.0%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.58 41.0 3.73e-01 73.0% 74.7%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.57 40.0 3.40e-01 97.3% 44.0%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.71e-01 73.0% 78.8%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 38.0 3.17e-01 70.3% 68.0%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 38.0 3.18e-01 70.3% 85.6%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 43.0 2.90e-01 91.9% 70.4%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.68e-01 82.4% 41.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 38.0 3.31e-01 86.5% 52.3%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 39.0 2.84e-01 86.5% 44.2%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 2.96e-01 95.9% 38.3%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 2.88e-01 77.0% 60.1%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.50 42.0 2.70e-01 91.9% 66.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.77 39.0 3.12e-01 73.0% 25.7%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 38.0 2.86e-01 85.1% 24.1%
4666900 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 41.0 3.38e-01 71.6% 36.0%
4681355 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 40.0 3.38e-01 73.0% 37.5%
139279 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 40.0 3.69e-01 71.6% 47.9%
5049161 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.66 40.0 2.88e-01 100.0% 21.4%
2687 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.65 46.0 4.03e-01 73.0% 78.0%
3785619 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 40.0 3.38e-01 71.6% 41.7%
3707907 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.61 42.0 3.71e-01 73.0% 71.3%
4027679 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 39.0 3.45e-01 71.6% 45.7%
3364027 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.61 43.0 3.15e-01 74.3% 48.8%
4025349 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.59 42.0 3.43e-01 93.2% 42.3%
3716174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 42.0 3.65e-01 93.2% 53.6%
3710532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 39.0 3.43e-01 73.0% 54.3%
3931606 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 40.0 3.44e-01 87.8% 48.7%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.55 36.0 3.49e-01 75.7% 60.0%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 39.0 3.37e-01 86.5% 49.6%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 40.0 3.55e-01 94.6% 53.6%
3600992 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 37.0 2.89e-01 73.0% 59.6%
4023956 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.53 38.0 3.16e-01 90.5% 43.1%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 43.0 3.56e-01 87.8% 51.2%
3321176 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 40.0 2.58e-01 86.5% 48.0%
5000789 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 40.0 3.54e-01 86.5% 57.1%
4928633 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.52 36.0 3.22e-01 71.6% 67.6%
5035493 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 38.0 3.37e-01 86.5% 54.3%
3937187 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 38.0 3.33e-01 86.5% 51.8%
4410759 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 41.0 3.56e-01 86.5% 57.4%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 41.0 3.42e-01 85.1% 58.4%
4977598 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 38.0 3.31e-01 86.5% 51.8%
3509321 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.51 40.0 2.64e-01 86.5% 51.8%
4996058 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 37.0 3.21e-01 75.7% 83.5%
4943526 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.50 39.0 3.10e-01 83.8% 74.0%
3538408 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 40.0 3.68e-01 85.1% 68.4%
3989311 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.50 34.0 2.83e-01 70.3% 67.7%
5031824 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.50 43.0 2.62e-01 97.3% 22.9%
3177612 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 40.0 3.40e-01 87.8% 59.2%
4882600 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.50 38.0 2.99e-01 98.6% 39.0%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 41.0 3.49e-01 86.5% 63.5%