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P1a
Euk-VirSquash_vein_yellowing_virus
P1a__YP_001788992__Squash_vein_yellowing_virus__397544
Identity
- Accession:
- YP_001788992 ↗
- Protein ID:
- P1a
- Kingdom:
- euk
Quality
70.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Squash_vein_yellowing_virus
TaxID: 397544
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-174
Domain cluster:
rep: P1__YP_009667090__Zucchini_shoestring_virus__1679239__D34-171
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gs0A01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.65 | 27.0 | 3.07e-01 | 97.0% | 48.8% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 18.0 | 2.32e-01 | 82.8% | 43.7% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 24.0 | 3.26e-01 | 83.4% | 86.9% |
D2
high
residues 266-346
Domain cluster:
representative
D3
high
residues 418-536
Domain cluster:
rep: P1__YP_010088119__Dendrobium_chlorotic_mosaic_virus__2562807__D286-419
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01577.23 best | Peptidase_S30 | 72.4 | 6.60e-20 | 100.0% | 54.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1792552 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.63 | 25.0 | 3.70e-01 | 77.3% | 87.5% |
| 3486356 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.58 | 27.0 | 3.45e-01 | 92.4% | 75.4% |
| 3468979 | 312.1.1.18 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › PF26217 | 0.54 | 39.0 | 3.51e-01 | 74.8% | 100.0% |
| 3787728 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.52 | 29.0 | 3.78e-01 | 76.5% | 95.7% |
| 3626991 | 10.12.1.44 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD | 0.51 | 36.0 | 2.84e-01 | 72.3% | 91.5% |