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P24
Euk-VirDiatraea_saccharalis_granulovirus
P24__YP_009182258__Diatraea_saccharalis_granulovirus__1675862
Identity
- Accession:
- YP_009182258 ↗
- Protein ID:
- P24
- Kingdom:
- euk
Quality
79.7
mean pLDDT
Taxonomy
TaxID: 1675862
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-93
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05073.18 best | Baculo_p24 | 122.9 | 1.70e-35 | 100.0% | 55.6% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 40.0 | 3.91e-01 | 70.9% | 57.6% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.60 | 36.0 | 4.23e-01 | 70.9% | 85.2% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 39.0 | 3.99e-01 | 72.1% | 89.5% |
| 1sseB00 | 1.10.238.100 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B | 0.57 | 39.0 | 3.97e-01 | 72.1% | 75.6% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 4.11e-01 | 74.4% | 100.0% |
| 1r89A04 | 3.30.70.1550 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Archaeal tRNA CCA-adding enzyme catalytic domain | 0.55 | 29.0 | 3.79e-01 | 87.2% | 100.0% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 38.0 | 3.37e-01 | 74.4% | 89.9% |
| 1ft9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.79e-01 | 70.9% | 83.5% |
| 1qqfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 38.0 | 2.74e-01 | 76.7% | 46.0% |
| 7rh9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 36.0 | 3.04e-01 | 72.1% | 84.0% |
| 4anjA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 38.0 | 3.53e-01 | 76.7% | 64.6% |
| 3anqD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 35.0 | 3.42e-01 | 98.8% | 61.9% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.52 | 37.0 | 3.09e-01 | 77.9% | 49.7% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 36.0 | 2.51e-01 | 75.6% | 88.8% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.12e-01 | 72.1% | 64.7% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.51 | 37.0 | 3.16e-01 | 79.1% | 50.0% |
| 1aroP03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.43e-01 | 89.5% | 81.3% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.15e-01 | 73.3% | 68.5% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587522 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.72 | 46.0 | 5.09e-01 | 74.4% | 80.0% |
| 3989255 | 101.1.9.141 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 | 0.72 | 51.0 | 4.12e-01 | 94.2% | 39.4% |
| 3179612 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 50.0 | 5.44e-01 | 95.3% | 94.3% |
| 4270095 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 46.0 | 5.02e-01 | 73.3% | 92.9% |
| 4595352 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.65 | 47.0 | 2.78e-01 | 77.9% | 43.9% |
| 1316879 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 44.0 | 5.04e-01 | 72.1% | 100.0% |
| 4101677 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.63 | 42.0 | 3.63e-01 | 73.3% | 43.0% |
| 4198222 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.63 | 43.0 | 4.67e-01 | 83.7% | 85.7% |
| 4668740 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 44.0 | 4.19e-01 | 74.4% | 72.4% |
| 3409334 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.61 | 44.0 | 3.73e-01 | 75.6% | 62.1% |
| 3203041 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 54.0 | 5.14e-01 | 100.0% | 86.0% |
| 3289373 | 3601.1.1.0 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain | 0.61 | 41.0 | 3.52e-01 | 70.9% | 44.1% |
| 4564454 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.60 | 38.0 | 3.59e-01 | 76.7% | 52.4% |
| 3195578 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.60 | 43.0 | 3.72e-01 | 76.7% | 48.1% |
| 5039169 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.59 | 41.0 | 4.16e-01 | 100.0% | 74.1% |
| 5041445 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.59 | 42.0 | 4.14e-01 | 77.9% | 71.1% |
| 4025933 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 43.0 | 4.04e-01 | 77.9% | 83.8% |
| 4023885 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.57 | 42.0 | 2.51e-01 | 80.2% | 89.4% |
| 4941734 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 39.0 | 4.12e-01 | 70.9% | 100.0% |
| 4419013 | 101.1.9.13 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Tn916-Xis | 0.57 | 37.0 | 4.22e-01 | 75.6% | 96.7% |
| 3607656 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 42.0 | 4.10e-01 | 86.0% | 73.7% |
| 5004081 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.55 | 41.0 | 2.88e-01 | 81.4% | 95.3% |
| 3709334 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 43.0 | 4.21e-01 | 87.2% | 77.9% |
| 4530960 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 38.0 | 3.67e-01 | 79.1% | 62.0% |
| 5073710 | 633.6.1.3 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB | 0.55 | 46.0 | 3.56e-01 | 95.3% | 80.5% |
| 3442533 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 43.0 | 3.93e-01 | 87.2% | 80.0% |
| 3279254 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.80e-01 | 72.1% | 72.9% |
| 3822958 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.53 | 39.0 | 3.28e-01 | 81.4% | 73.3% |
| 3283903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.64e-01 | 79.1% | 62.7% |
| 3837892 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 2.69e-01 | 81.4% | 36.1% |
| 5081852 | 101.1.2.837 ↗ | alpha arrays › HTH › HTH › winged helix domain › Lin1244_N | 0.52 | 32.0 | 3.24e-01 | 100.0% | 58.9% |
| 5012052 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.52 | 36.0 | 3.23e-01 | 73.3% | 94.6% |
| 3290858 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.55e-01 | 77.9% | 65.7% |
| 3282379 | 304.163.1.4 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF30808 | 0.51 | 34.0 | 3.89e-01 | 93.0% | 98.3% |
| 3651728 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 4.03e-01 | 84.9% | 80.0% |
| 3808197 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.51 | 38.0 | 3.31e-01 | 80.2% | 75.0% |
| 4829296 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.50 | 34.0 | 3.13e-01 | 72.1% | 52.7% |
D2
medium
residues 97-163
Domain cluster:
rep: P24__YP_009330190__Plodia_interpunctella_granulovirus__262175__D99-164