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P28

Euk-Vir

Calibrachoa_mottle_virus

P28__YP_008378652__Calibrachoa_mottle_virus__204928

Identity

Accession:
YP_008378652 ↗
Protein ID:
P28
Kingdom:
euk

Quality

72.9 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Alphacarmovirus› Calibrachoa_mottle_virus

TaxID: 204928

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 119-209
PDB
Domain cluster: rep: p27__YP_010087347__Jasmine_virus_H__1960887__D118-186
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 48.0 5.37e-01 74.7% 87.5%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.70 52.0 4.89e-01 78.0% 73.4%
4ol9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 52.0 4.63e-01 81.3% 65.4%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 49.0 4.42e-01 81.3% 67.5%
1e6vA03 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.63 49.0 3.68e-01 83.5% 74.8%
4v3iA00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.62 43.0 3.60e-01 70.3% 79.1%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 49.0 3.82e-01 92.3% 38.5%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.61 43.0 4.17e-01 72.5% 87.0%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 47.0 3.77e-01 86.8% 66.2%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 44.0 4.10e-01 78.0% 67.0%
7dluA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 34.0 3.26e-01 90.1% 46.7%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 39.0 3.68e-01 86.8% 55.4%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.58 41.0 4.05e-01 74.7% 76.0%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.58 43.0 3.69e-01 81.3% 84.1%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 37.0 3.70e-01 89.0% 61.2%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 43.0 3.76e-01 80.2% 52.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 33.0 3.78e-01 72.5% 79.1%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 3.49e-01 84.6% 55.5%
2wtbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 41.0 3.35e-01 80.2% 70.0%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.54 39.0 3.45e-01 74.7% 59.1%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.53 36.0 3.95e-01 73.6% 88.7%
7e5aB02 1.20.1000.10 Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain 0.53 46.0 3.85e-01 97.8% 77.4%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 37.0 3.60e-01 74.7% 80.2%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.51 35.0 3.41e-01 70.3% 65.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952621 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.77 52.0 5.91e-01 74.7% 92.8%
4124450 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 51.0 5.73e-01 74.7% 94.1%
4093848 3584.1.1.1 ↗ alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.70 50.0 3.84e-01 75.8% 42.9%
4351255 191.1.1.91 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › PF29842 0.67 47.0 4.79e-01 73.6% 82.2%
3170802 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.66 53.0 5.29e-01 89.0% 97.9%
4014527 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.65 47.0 4.71e-01 76.9% 87.4%
3171699 101.1.1.133 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.65 52.0 5.09e-01 89.0% 93.0%
None — 0.63 48.0 3.31e-01 80.2% 36.5%
3988991 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.62 42.0 4.31e-01 70.3% 71.1%
3696673 109.4.1.501 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UME 0.62 44.0 3.11e-01 74.7% 24.7%
4577554 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 46.0 4.59e-01 81.3% 77.9%
4091685 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.61 40.0 3.78e-01 83.5% 55.0%
3913391 108.1.1.12 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha 0.60 41.0 4.60e-01 71.4% 100.0%
5019219 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 46.0 3.24e-01 83.5% 57.7%
4046399 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.59 44.0 4.50e-01 82.4% 84.7%
1694870 3996.1.1.0 ↗ alpha complex topology › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain 0.58 41.0 4.02e-01 74.7% 90.3%
3411768 627.1.1.2 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 0.57 40.0 3.99e-01 74.7% 93.7%
2755231 148.1.3.28 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.55 42.0 3.33e-01 82.4% 68.0%
3755128 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.54 32.0 3.20e-01 87.9% 54.7%
3699724 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.53 37.0 4.07e-01 74.7% 94.3%
3601089 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.53 37.0 3.90e-01 73.6% 83.7%
3975961 5058.1.1.88 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 0.52 33.0 3.30e-01 71.4% 59.0%