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P3-P5
Euk-VirLuffa_aphid-borne_yellows_virus
P3-P5__YP_009162335__Luffa_aphid-borne_yellows_virus__1462682
Identity
- Accession:
- YP_009162335 ↗
- Protein ID:
- P3-P5
- Kingdom:
- euk
Quality
60.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Sobelivirales›
Solemoviridae›
Polerovirus›
Luffa_aphid-borne_yellows_virus
TaxID: 1462682
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-213
Domain cluster:
rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00894.25 best | Luteo_coat | 133.3 | 7.90e-39 | 99.3% | 98.6% |
D2
high
residues 241-442
Domain cluster:
rep: P3-P5_polyprotein__YP_009552852__Apple_luteovirus_1__2170544__D231-433
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.71 | 37.0 | 5.02e-01 | 98.0% | 98.1% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 40.0 | 5.02e-01 | 98.5% | 91.7% |
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 36.0 | 4.23e-01 | 99.5% | 78.1% |
| 2q2eB05 | 2.60.40.2960 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 30.0 | 4.17e-01 | 99.0% | 95.6% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 34.0 | 4.21e-01 | 99.0% | 84.0% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 21.0 | 2.98e-01 | 83.7% | 60.6% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 30.0 | 4.04e-01 | 97.5% | 87.0% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 31.0 | 4.17e-01 | 98.0% | 95.0% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 36.0 | 4.46e-01 | 94.6% | 99.2% |
| 4w6yA00 | 2.60.120.1210 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 40.0 | 4.56e-01 | 89.1% | 93.8% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 34.0 | 4.42e-01 | 100.0% | 100.0% |
| 8a28A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 40.0 | 4.71e-01 | 99.0% | 100.0% |
| 2xomA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 41.0 | 4.74e-01 | 100.0% | 100.0% |
| 2rttA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 30.0 | 3.95e-01 | 98.0% | 94.3% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 31.0 | 3.98e-01 | 98.5% | 95.4% |
| 3ndzE00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 30.0 | 3.90e-01 | 82.2% | 93.5% |
| 5buvB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 29.0 | 3.09e-01 | 99.5% | 54.3% |
| 3aclA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 31.0 | 3.84e-01 | 96.5% | 89.0% |
| 1jv2A04 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.55 | 43.0 | 4.46e-01 | 100.0% | 86.7% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 4.63e-01 | 98.0% | 88.4% |
| 1guiA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 41.0 | 4.63e-01 | 99.5% | 100.0% |
| 1oh4A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 4.53e-01 | 100.0% | 94.8% |
| 7lyuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 33.0 | 3.41e-01 | 98.0% | 61.6% |
| 2w47A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 35.0 | 4.14e-01 | 100.0% | 97.0% |
| 1ej8A00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.53 | 33.0 | 3.79e-01 | 88.6% | 86.4% |
| 7pjjA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 34.0 | 4.08e-01 | 98.5% | 99.2% |
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 34.0 | 4.07e-01 | 100.0% | 97.8% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 4.37e-01 | 99.0% | 97.5% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 33.0 | 4.08e-01 | 99.5% | 100.0% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 28.0 | 3.05e-01 | 98.0% | 59.0% |
| 6iw2A01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.52 | 27.0 | 3.23e-01 | 99.5% | 72.9% |
| 4l9bA02 | 2.60.120.1400 | Mainly Beta › Sandwich › Jelly Rolls › Viral head domain of polysaccharide receptor-binding protein-like | 0.51 | 46.0 | 4.59e-01 | 100.0% | 93.4% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 4.48e-01 | 88.6% | 100.0% |
| 2y8kA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 36.0 | 4.11e-01 | 100.0% | 100.0% |
| 3wnoA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 32.0 | 3.87e-01 | 98.5% | 98.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029291 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 41.0 | 4.82e-01 | 100.0% | 85.0% |
| 5036103 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 37.0 | 4.24e-01 | 81.7% | 75.0% |
| 3881344 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.65 | 28.0 | 4.03e-01 | 98.0% | 87.8% |
| 3776151 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.64 | 46.0 | 5.05e-01 | 85.6% | 89.1% |
| 3267864 | 11.1.5.62 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 | 0.64 | 38.0 | 4.82e-01 | 97.0% | 100.0% |
| 4965647 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.63 | 37.0 | 4.72e-01 | 87.1% | 100.0% |
| 3917076 | 11.1.1.909 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Gpi16 | 0.63 | 46.0 | 4.49e-01 | 97.5% | 67.4% |
| 3203053 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.62 | 43.0 | 4.63e-01 | 100.0% | 82.4% |
| 3491698 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 4.79e-01 | 99.5% | 88.2% |
| 5057293 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 33.0 | 3.98e-01 | 99.0% | 79.2% |
| 5083418 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 32.0 | 4.28e-01 | 98.5% | 100.0% |
| 3173715 | 4081.1.1.10 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Gpi16 | 0.61 | 46.0 | 4.59e-01 | 97.0% | 76.6% |
| 4113036 | 11.1.1.1109 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_2 | 0.60 | 31.0 | 4.13e-01 | 98.5% | 96.0% |
| 4211656 | 11.1.5.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 | 0.60 | 31.0 | 4.15e-01 | 98.5% | 97.0% |
| 3257125 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.60 | 30.0 | 4.13e-01 | 99.5% | 98.9% |
| 3180910 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 41.0 | 4.86e-01 | 100.0% | 100.0% |
| 2430480 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.59 | 32.0 | 3.87e-01 | 83.7% | 78.0% |
| 3958482 | 11.1.5.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 | 0.59 | 31.0 | 4.09e-01 | 98.0% | 94.3% |
| 3264945 | 11.1.5.62 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 | 0.59 | 30.0 | 4.09e-01 | 76.7% | 100.0% |
| 3875205 | 4081.1.1.10 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Gpi16 | 0.58 | 46.0 | 4.79e-01 | 97.5% | 88.9% |
| 399921 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 41.0 | 4.70e-01 | 100.0% | 99.3% |
| 5012265 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 4.31e-01 | 85.6% | 91.4% |
| 3945526 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.57 | 40.0 | 4.58e-01 | 100.0% | 96.7% |
| 140125 | 11.1.1.93 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 | 0.56 | 31.0 | 3.98e-01 | 98.5% | 95.4% |
| 2455591 | 11.1.5.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 | 0.56 | 28.0 | 3.89e-01 | 97.0% | 100.0% |
| 4547203 | 11.1.1.1109 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_2 | 0.56 | 30.0 | 3.96e-01 | 98.0% | 100.0% |
| 3395164 | 11.1.1.447 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NDNF_C | 0.56 | 31.0 | 3.83e-01 | 99.5% | 84.8% |
| 3945567 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.56 | 40.0 | 4.54e-01 | 100.0% | 98.0% |
| 4003859 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.54 | 47.0 | 4.74e-01 | 97.5% | 91.2% |
| 4575485 | 10.32.1.51 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 | 0.54 | 34.0 | 4.14e-01 | 99.5% | 99.2% |
| 4247603 | 11.1.1.1034 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30217 | 0.53 | 36.0 | 4.21e-01 | 98.5% | 100.0% |
| 3240214 | 11.1.1.447 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NDNF_C | 0.53 | 31.0 | 3.69e-01 | 99.0% | 86.2% |
| 5018271 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 33.0 | 4.04e-01 | 88.6% | 100.0% |
| 3187876 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.52 | 46.0 | 4.24e-01 | 97.0% | 74.6% |
| 3414387 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.52 | 47.0 | 4.27e-01 | 97.5% | 74.0% |
| 3575679 | 12.3.1.42 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 | 0.51 | 35.0 | 3.56e-01 | 87.6% | 67.7% |
| 5005732 | 11.1.5.142 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF27408 | 0.51 | 36.0 | 4.01e-01 | 99.0% | 92.3% |
| 3956941 | 11.1.5.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 | 0.51 | 27.0 | 3.62e-01 | 82.2% | 99.0% |
| 3206485 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 35.0 | 4.03e-01 | 100.0% | 97.2% |
| 3364333 | 12.3.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N | 0.51 | 41.0 | 3.29e-01 | 84.2% | 67.3% |
| 5034022 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 31.0 | 3.64e-01 | 97.5% | 90.8% |