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P3-P5

Euk-Vir

African_eggplant_yellowing_virus

P3-P5__YP_009351867__African_eggplant_yellowing_virus__1963256

Identity

Accession:
YP_009351867 ↗
Protein ID:
P3-P5
Kingdom:
euk

Quality

62.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› African_eggplant_yellowing_virus

TaxID: 1963256

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-200
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00894.25 best Luteo_coat 167.2 2.80e-49 99.3% 100.0%
D2 medium residues 218-280
PDB
Domain cluster: rep: coat_protein_readthrough__YP_003029840__Wheat_yellow_dwarf_virus-GPV__572239__D231-291
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 45.0 4.02e-01 96.8% 51.1%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 49.0 4.12e-01 100.0% 83.6%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.58 48.0 3.53e-01 98.4% 51.3%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 35.0 2.79e-01 76.2% 28.0%
2mogA00 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 4.28e-01 100.0% 81.1%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 38.0 2.79e-01 87.3% 23.5%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 49.0 3.72e-01 100.0% 60.0%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 46.0 4.18e-01 100.0% 72.1%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 35.0 3.39e-01 98.4% 57.3%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 44.0 3.31e-01 100.0% 62.8%
4bfoA00 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.53 42.0 3.56e-01 98.4% 52.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 2.92e-01 95.2% 66.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.26e-01 100.0% 37.5%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.52 43.0 3.70e-01 100.0% 74.1%
4o5lL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.69e-01 98.4% 81.7%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 33.0 2.87e-01 85.7% 40.4%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.00e-01 92.1% 41.0%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 36.0 3.50e-01 100.0% 68.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055306 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 2.92e-01 85.7% 42.5%
3988269 3114.1.1.1 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.55 42.0 3.92e-01 88.9% 81.2%
1313669 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.54 45.0 3.99e-01 100.0% 74.5%
3424157 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 3.28e-01 100.0% 86.3%
3389857 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 38.0 3.03e-01 93.7% 35.7%
3516336 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 38.0 3.10e-01 93.7% 38.5%
4976409 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.51 42.0 3.65e-01 100.0% 81.8%
3707596 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.51 41.0 2.96e-01 93.7% 86.2%
3216497 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.51 32.0 3.37e-01 84.1% 73.6%
4984069 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 33.0 2.67e-01 96.8% 30.7%
4370765 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.51 41.0 2.72e-01 92.1% 30.3%
4375642 5084.5.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.50 40.0 2.59e-01 96.8% 22.4%
3849518 11.1.1.549 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM132D_N 0.50 40.0 3.69e-01 93.7% 97.8%
3449012 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 36.0 3.11e-01 87.3% 45.5%
4989875 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 38.0 2.64e-01 85.7% 37.2%
D3 medium residues 281-425
PDB
Domain cluster: rep: P3-P5_readthrough_protein__YP_009111316__Sauropus_yellowing_virus__1577997__D299-420