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P3-P5_fusion_protein

Euk-Vir

Pepo_aphid-borne_yellows_virus

P3-P5_fusion_protein__YP_009254741__Pepo_aphid-borne_yellows_virus__1462681

Identity

Accession:
YP_009254741 ↗
Protein ID:
P3-P5_fusion_protein
Kingdom:
euk

Quality

66.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Pepo_aphid-borne_yellows_virus

TaxID: 1462681

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-198
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00894.25 best Luteo_coat 195.8 4.10e-58 100.0% 100.0%
D2 high residues 276-422
PDB
Domain cluster: rep: P3-P5_polyprotein__YP_009552852__Apple_luteovirus_1__2170544__D231-433
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 130.4 1.20e-37 100.0% 28.1%
D3 medium residues 220-275
PDB
Domain cluster: rep: coat_protein_readthrough__YP_003029840__Wheat_yellow_dwarf_virus-GPV__572239__D231-291
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.67 46.0 3.83e-01 94.6% 40.6%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.64 37.0 3.65e-01 82.1% 50.8%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 37.0 3.69e-01 82.1% 53.4%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 38.0 3.72e-01 87.5% 53.1%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 48.0 3.07e-01 92.9% 41.2%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 47.0 2.99e-01 91.1% 37.8%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 46.0 3.66e-01 96.4% 59.7%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.58 36.0 2.71e-01 87.5% 24.8%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 47.0 3.66e-01 100.0% 58.6%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 41.0 2.97e-01 80.4% 89.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 49.0 3.88e-01 100.0% 60.3%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 44.0 3.69e-01 94.6% 69.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 36.0 2.45e-01 92.9% 15.3%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 37.0 2.74e-01 73.2% 87.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 34.0 2.63e-01 85.7% 24.4%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.47e-01 92.9% 66.7%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.53 37.0 3.09e-01 91.1% 39.3%
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.71e-01 87.5% 66.3%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.54e-01 89.3% 98.9%
1vquB02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.52 44.0 2.85e-01 94.6% 70.0%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 40.0 2.59e-01 85.7% 20.2%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.51 38.0 2.56e-01 89.3% 33.8%
3qo6A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 3.43e-01 92.9% 58.8%
7a4aA01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.55e-01 89.3% 73.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 40.0 3.20e-01 91.1% 78.3%
8gsxA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.07e-01 94.6% 70.2%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 43.0 2.80e-01 98.2% 44.2%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.50 40.0 2.72e-01 96.4% 21.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 40.0 3.85e-01 87.5% 52.3%
4471281 10.1.1.89 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 0.62 41.0 2.77e-01 85.7% 16.6%
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 36.0 3.43e-01 83.9% 44.3%
3989333 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 35.0 3.48e-01 83.9% 51.7%
4029739 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.59 45.0 3.65e-01 87.5% 40.8%
3273300 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.58 41.0 3.61e-01 94.6% 48.9%
3587070 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 39.0 3.01e-01 91.1% 28.3%
4468497 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 44.0 3.60e-01 85.7% 66.7%
2772149 11.1.1.286 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Phlebo_G2_C 0.56 47.0 3.88e-01 96.4% 61.3%
5026433 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 39.0 3.29e-01 91.1% 41.0%
5071965 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 42.0 3.64e-01 85.7% 60.0%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.55 36.0 2.91e-01 94.6% 29.3%
3904569 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 3.60e-01 96.4% 62.4%
3604518 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.54 34.0 2.89e-01 89.3% 35.0%
3249705 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.76e-01 91.1% 71.1%
3257464 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.53 44.0 3.58e-01 89.3% 69.0%
3648118 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.53 42.0 3.67e-01 92.9% 55.6%
5073695 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 41.0 3.47e-01 87.5% 54.0%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 39.0 2.69e-01 98.2% 20.4%
4944561 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 40.0 3.45e-01 87.5% 53.0%
3251004 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.53 42.0 3.63e-01 89.3% 75.6%
4847872 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 40.0 3.27e-01 87.5% 80.2%
5018204 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.52 40.0 2.93e-01 87.5% 32.1%
4970302 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.66e-01 92.9% 76.5%
3271752 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.81e-01 98.2% 69.4%
3927710 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.12e-01 96.4% 50.3%
3190012 883.1.1.12 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.51 41.0 2.92e-01 100.0% 38.7%
3709649 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.51 40.0 3.26e-01 94.6% 61.5%
380441 11.1.1.81 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set 0.51 42.0 3.79e-01 100.0% 69.8%
3258964 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.57e-01 91.1% 72.2%
3509891 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 38.0 2.42e-01 87.5% 45.3%
3273773 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.55e-01 91.1% 69.4%
3256587 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.92e-01 91.1% 78.5%