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P3

Euk-Vir

Canna_yellow_streak_virus

P3__YP_003208053__Canna_yellow_streak_virus__433462

Identity

Accession:
YP_003208053 ↗
Protein ID:
P3
Kingdom:
euk

Quality

81.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Canna_yellow_streak_virus

TaxID: 433462

Cluster

View cluster (66 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-197
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 98.9 5.20e-28 96.8% 39.2%
D2 medium residues 282-347
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.83 64.0 4.41e-01 86.4% 27.3%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.72 55.0 5.36e-01 86.4% 73.6%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.70 46.0 4.11e-01 92.4% 50.0%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 49.0 4.44e-01 89.4% 55.2%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.69 53.0 4.88e-01 81.8% 65.9%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.69 53.0 3.50e-01 81.8% 21.4%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 54.0 5.13e-01 84.8% 87.0%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 52.0 4.80e-01 81.8% 77.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 47.0 4.76e-01 86.4% 78.1%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 53.0 5.29e-01 86.4% 86.6%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 53.0 5.37e-01 86.4% 89.1%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.65 45.0 4.67e-01 74.2% 95.2%
3ceiA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.64 48.0 4.98e-01 84.8% 84.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 49.0 5.01e-01 89.4% 85.7%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.19e-01 75.8% 58.0%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 53.0 4.93e-01 89.4% 74.1%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 51.0 5.05e-01 86.4% 85.3%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 52.0 4.72e-01 100.0% 66.7%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 43.0 3.66e-01 81.8% 45.8%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.61 47.0 4.29e-01 84.8% 66.3%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 53.0 3.96e-01 93.9% 70.0%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 48.0 4.20e-01 89.4% 85.1%
1a7vA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.57 48.0 3.92e-01 95.5% 95.2%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.56 40.0 3.94e-01 78.8% 78.7%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 42.0 3.75e-01 92.4% 57.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 42.0 3.94e-01 87.9% 81.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597653 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.82 57.0 3.95e-01 72.7% 25.9%
5063967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 61.0 6.41e-01 92.4% 86.7%
3339637 148.1.1.68 ↗ alpha arrays › Histone-like › Histone-related › Histone › PLAC8 0.75 53.0 4.97e-01 74.2% 66.3%
3486786 165.3.1.0 ↗ alpha duplicates or obligate multimers › Dimerisation interlock › Phenylalanine zipper › Phenylalanine zipper 0.74 52.0 5.67e-01 74.2% 89.1%
4029754 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 59.0 5.36e-01 86.4% 92.9%
4982795 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.07e-01 75.8% 87.7%
4819006 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.69 53.0 3.47e-01 90.9% 19.8%
4983598 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 48.0 4.86e-01 74.2% 75.4%
3842812 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.68 54.0 3.70e-01 87.9% 26.0%
3457079 605.1.1.150 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › IQ 0.67 58.0 4.99e-01 92.4% 67.0%
3688424 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.67 55.0 3.60e-01 90.9% 85.0%
3531209 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.62 45.0 4.49e-01 81.8% 72.9%
3960341 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.61 44.0 3.55e-01 74.2% 42.5%
3215994 109.46.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_VPS8 0.60 42.0 2.48e-01 75.8% 10.0%
3877350 109.46.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_NOL10_N, Beta-prop_IFT122_1st 0.60 41.0 2.48e-01 75.8% 9.9%
3718782 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 53.0 3.59e-01 98.5% 60.9%
4371976 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.58 48.0 2.82e-01 100.0% 65.5%